Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g01011 ATGGCATCATCATCCTCAAGCAACAGCGCAAACTACGACATGTCGTGGGTCGAGAAGTACCGCCCCAGCAAGGTCGTCGACATCGTCGGCAACGAAGACGCCGTTTCCAGACTCCAAGTCATCGCTCATCTTTGTGATAGTGCAGAGAGGATATTTTCTAGCGAACCAACTGTCATACAGCTTAAGGCACCAATTAAAATATTTGGTGATTTACATGGGCAGTTTGGGGATCTCATGCGCCTTTTTGATGAGTATGGTTCACCATCAACTGCCGGTGACATAGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATAGGGGCCAACACAGCCTGGAAACTATAAGCCTTCTGCTCGCTTTGAAGGTTGAGTATCCAAACAATGTTCACTTAATACGTGGAAATCATGAAGCTGCAGATATTAATGCCCTTTTTGGTTTTCGAATTGAGTGCATTGAGAGGATGGGTGAGAGAGATGGAATTTGGACATGGCACCGAATAAACCGTCTGTTTAACTGGCTTCCTCTTGCGGCTCTAATTGAGAAAAAAAATCATTTGCATGCACGGGGGTATTGGTCGTTCAATAAATCACTTGGAACAAATTGA 609 0.4401 MASSSSSNSANYDMSWVEKYRPSKVVDIVGNEDAVSRLQVIAHLCDSAERIFSSEPTVIQLKAPIKIFGDLHGQFGDLMRLFDEYGSPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINRLFNWLPLAALIEKKNHLHARGYWSFNKSLGTN 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g01011 202 Pfam Calcineurin-like phosphoesterase 64 184 IPR004843 GO:0016787
Vifa6g01011 202 SUPERFAMILY Metallo-dependent phosphatases 38 185 IPR029052 -
Vifa6g01011 202 PRINTS Serine/threonine phosphatase family signature 99 126 IPR006186 GO:0016787
Vifa6g01011 202 PRINTS Serine/threonine phosphatase family signature 132 156 IPR006186 GO:0016787
Vifa6g01011 202 PRINTS Serine/threonine phosphatase family signature 170 196 IPR006186 GO:0016787
Vifa6g01011 202 PRINTS Serine/threonine phosphatase family signature 64 91 IPR006186 GO:0016787
Vifa6g01011 202 Gene3D - 4 190 IPR029052 -
Vifa6g01011 202 ProSitePatterns Serine/threonine specific protein phosphatases signature. 133 138 IPR006186 GO:0016787
Vifa6g01011 202 SMART pp2a_7 36 201 IPR006186 GO:0016787
Vifa6g01011 202 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 40 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g01011 Vifa-Chr6 331964351 331965059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g01011 65 184 Calmodulin-binding Proteins AT5G63870 37.500 1.75e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g01011 - - csin:114280573 291.582