Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00991 ATGGCATCTTCTTTCGTCAAGCTTGACGATTCTCCAATGTTCCAGAAGCAGTTATTTTTTATGGAAGACACAGCAGACGAGTTAAAGGATCGGTGCCAGAATCTATTCAAAGGGTGTAAGAAATTTATGACAGCTTTGGGGGAAGCACATAATGGAGAAAACGCCTTTGCTGATTCATTAGAAGCATTTGGAGGAGGCTACGACGACCCTGTTAGTGTATCAGTTGGAGGACCCGTCATATCTAAGTTTATCACTGCACTACGTGAGTTAGCTACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGATTGACCGGTTGTCAGAGTTTCTAAATGTTGATTTGCAAAATGCAAAGGAATCTCGTCGTCGTTTTGACAAATCTGTGCAATCGTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACTCCTGAAGATATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCAAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAGTCGATAAGTGCAATAATGGACGCTCATTTGAGATACTTTAAACTGGGTTATGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACGTATGCTCAACAATCTAAAGAAGTGGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATCCAGGAATACAGGACACAGACAGAAGTTGAAAATATACCCATGCCAGGTGCTGATGGCACCCATCCTGTAGGTTTGAATTCTTACAAAAGCTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAGCAAGGCTATCTGTTAAAACGATCATCAAGGATGCGAGGAGATTGGAAAAGAAGGTTTTTTGTACTTGATAACCATGGGAGTTTATATTATTACAGATCAAAAGGACCCAAACCCGCGGGATTTCAGTCATATAATTATAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAGTAGGGCAGCGTCACTAAATGAGGATATTTTGGGTTCTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGACGCAGAGGATACTGATCTACGACTTTGCTTCCGTATCATTTCTCCCTCAAAAACATATACACTGCAGGCTGAAAATGAAGCTGATAGAATGGACTGGGTAAACAAAATTACTGGAGCTATCACCTCGCTTTTTAATTTTCAGTTTCTTCAACAGCCTCATTATGGTAAATTGCAATTACAAAATAAAAACTCAGCAACTGGTTCTTCCTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGATGATGTATATTCCAAAGAAGTGGGTAGTGTCTCTAAAATTTTAAGGGGAATTCCTGGGAATGACAAGTGTGCTGAGTGCAGTACTCCTGAACCAGACTGGGCATCTTTAAACCTTGGTATACTGCTGTGTATTGAATGCTCCGGAGTGCATCGCAATCTTGGTGTTCATATCTCAAAGGTGAGATCTATAACGTTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAATTTAGGTAATACTTTTTGTAATTCTATTTGGGAGGGCTTGCTTCTGCTTGGTGATGAAAGAGTAGGTGAATCAAATGTGCCTTTGAAACCATGTTCCACAGATCCCTCCCAATATAAAGAAAAGTACATCCAAGCAAAGTATGCAGAGAAATCACTAGTCATCCGGGAAGAGGACATACCCGAAAAACCTTCAGTTTCCACAAAAATATGGCAAGCAGTTCAGGCTATAACTGTACGAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCTATAAACACAAAATTTGAAGAGGCGGTTTCCCATGCAGAGACTGAAAATCATCAGCATGATCCTGAAGCCTGTCTGAGGATTAAGGAGGCTAATGAAACAGAGAGTTGTTTCCGCGGTTGGTCTTTATTACACCTAGCATGTCATTCTGGCAGTACATTAATGGTTGAGCTGTTGCTCCAATTCGGCGCTGATATAAACATGCGTGATTATCATGGAAGGACTCCCTTGCACCGTTGCATTTCTAGTGGGAAAAATTCATTGGCTAAGTTTTTACTAAGAAGGGGCGCAAAACCATCAATTAAAGATGCTGGTGGACATACTGCACTTGAAAGAGCAATGGAGTTGGGAGCAATAACTGACGAAGAGCTATTTATCTTGCTTGTTGAATGCTAG 2298 0.4012 MASSFVKLDDSPMFQKQLFFMEDTADELKDRCQNLFKGCKKFMTALGEAHNGENAFADSLEAFGGGYDDPVSVSVGGPVISKFITALRELATFKELLRSQVEHVLIDRLSEFLNVDLQNAKESRRRFDKSVQSYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQTEVENIPMPGADGTHPVGLNSYKSFEAGMQSATKGEIQTVKQGYLLKRSSRMRGDWKRRFFVLDNHGSLYYYRSKGPKPAGFQSYNYSRSSEQNSGMFGRFRSRHSRAASLNEDILGSCTVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNFQFLQQPHYGKLQLQNKNSATGSSLTSQQEDSNKSLMDDVYSKEVGSVSKILRGIPGNDKCAECSTPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGNTFCNSIWEGLLLLGDERVGESNVPLKPCSTDPSQYKEKYIQAKYAEKSLVIREEDIPEKPSVSTKIWQAVQAITVREVYRLIVTSTSNPINTKFEEAVSHAETENHQHDPEACLRIKEANETESCFRGWSLLHLACHSGSTLMVELLLQFGADINMRDYHGRTPLHRCISSGKNSLAKFLLRRGAKPSIKDAGGHTALERAMELGAITDEELFILLVEC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00991 765 SMART arf_gap_3 471 603 IPR001164 GO:0005096
Vifa6g00991 765 SUPERFAMILY BAR/IMD domain-like 8 310 IPR027267 -
Vifa6g00991 765 SMART PH_update 288 423 IPR001849 -
Vifa6g00991 765 ProSiteProfiles PH domain profile. 287 421 IPR001849 -
Vifa6g00991 765 CDD ArfGap 475 590 - -
Vifa6g00991 765 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Vifa6g00991 765 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Vifa6g00991 765 PRINTS HIV Rev interacting protein signature 525 546 IPR001164 GO:0005096
Vifa6g00991 765 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Vifa6g00991 765 SUPERFAMILY ArfGap/RecO-like zinc finger 473 596 IPR037278 -
Vifa6g00991 765 Pfam Putative GTPase activating protein for Arf 475 596 IPR001164 GO:0005096
Vifa6g00991 765 Gene3D Arf GTPase activating protein 451 603 IPR038508 -
Vifa6g00991 765 ProSiteProfiles Ankyrin repeat profile. 706 738 IPR002110 GO:0005515
Vifa6g00991 765 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Vifa6g00991 765 Coils Coil 229 249 - -
Vifa6g00991 765 SMART ANK_2a 706 735 IPR002110 GO:0005515
Vifa6g00991 765 SMART ANK_2a 673 702 IPR002110 GO:0005515
Vifa6g00991 765 PANTHER CENTAURIN/ARF 3 763 IPR045258 GO:0005096
Vifa6g00991 765 ProSiteProfiles Ankyrin repeat profile. 673 705 IPR002110 GO:0005515
Vifa6g00991 765 SUPERFAMILY Ankyrin repeat 660 764 IPR036770 -
Vifa6g00991 765 CDD PH_ACAP 290 425 - -
Vifa6g00991 765 CDD BAR_SFC_plant 16 217 IPR035670 -
Vifa6g00991 765 SUPERFAMILY PH domain-like 287 436 - -
Vifa6g00991 765 Pfam Ankyrin repeats (3 copies) 666 737 IPR002110 GO:0005515
Vifa6g00991 765 ProSiteProfiles Ankyrin repeat region circular profile. 706 737 - -
Vifa6g00991 765 Pfam PH domain 289 420 IPR001849 -
Vifa6g00991 765 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 603 IPR001164 GO:0005096
Vifa6g00991 765 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Vifa6g00991 765 ProSiteProfiles Ankyrin repeat region circular profile. 673 704 - -
Vifa6g00991 765 Gene3D - 607 756 IPR036770 -
Vifa6g00991 765 Gene3D - 280 431 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00991 Vifa-Chr6 330042236 330054836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00991 481 592 C2H2 Transcription Factor Family AT3G07940 42.478 1.04e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00991 K12489 - gmx:100796740 1287.32