Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00989 ATGACGCTATCCACCGCGATATCTCCCTCCCTAACCGAATCCAAGAAGAAGAAGAACCGCAACAAAAATGGAGGAGCAGAAGAAGACGAATCAACGGAGCAACAAAAGCAACCAGACTTCATGATCAAACCAAGCACCCGAGCATCATCAATCGACACATCAGAGTGGCCGATACTCCTCAAGAACTACGACCGCCTCAACATCCGAACCGGTCACTACACTCCTCTCCCCGCCGGTCACTCTCCGCTCAAACGGCCACTCAACGATTACCTCAAATACGGTGTCCTCAACCTTGATAAGCCGGCAAACCCTTCTTCTCACGAAGTTGTTGCTTGGATCAAGCGGATTCTCCGTGTCGAAAAGACCGGTCACAGCGGTACTCTCGATCCCAAAGTTACTGGGAATTTGATTGTTTGCATTGACAGAGCGACAAGGCTTGTGAAGTCTCAACAGGGTGCTGGGAAAGAGTATGTTTGTATTGCGAGACTTCATTCCGCTGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACCCTAACTGGTGCTGTTTTTCAAAGGCCACCTTTGATTTCTGCTGTTAAGCGTCAACTTAGGATTAGAACTGTTTATGAAAGTAAGATGCTTGAATATGATGCTGACAGACATTTAGTTGTTTTTTGGATTTCGTGTGAGGCTGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTGTTGCTTGGTGTTGGTAGTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAAGATAATATGGTTTCTATGCATGATGTAATGGATGCTCAATGGGTTTACGATAATAATCGCGATGAAACTTATCTGAGGAGGGTTGTTATGCCTTTGGAAGTTCTTTTGACTAGTTATAAGAGATTGGTTGTTAAGGATTCTGCTGTTAATGCTATTTGTTATGGGGCTAAGTTGATGATTCCAGGTTTGCTTAGGTTTGAGAATGATATTGATGCTGGTGAGGAGGTCGTGCTTATGACCACCAAGGGTGAAGCTATTGCTCTTGGGATTGCTGAGATGACTACTGCTGTTATGGCCAGTTGTGATCATGGTGTTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTACAAAGAAGAAGCTGATTGCTCTAGGGAAGCTTGATAAGCATGGGAAGCCAAACGCTCATACTCCTGAAGAGTGGGTGAGAAATGTGGAGGTACTGCCTGCTGGTTGGGACAGTGCGATTGCTGCGAAGGCTGCTGCTACTGAAACTGAAGATGGGAAGAAAGTGGTTGCTGAGGATGGAGAAGGGCGTAAGAGAAAGATACATGAAGATGCCGATAGTCCTGCTCCTGCTAAGAAGTCCAAAGTTGCTGAAGTTGAAGATGAAGAAAAAGTGAAGACCGTTAACGTAGATGAAGCTGCTGTGGATGTTGAAGAAGATAAGAAAGAAAAGAAGAAAAAGAAAAAGAAGAAGGATAAGGAGAATGATGATGCGGCATCTTCTGATGAGGAGAAAGTTGTAAAGGAGAAGAAAAAGAAGAACAAGGATAAAGGTGACGATGGTTCTTCTGAAGCGGACAAGTCCGAGAAAAAGAAAAAGAAGCAAAAGGAAAAGGTTGAAGAAGCTTCACCTGAAGTGGAGAAATTTGAGAAGAAGAAGAAGAAGAAGAAAGACAAAGATGATGCTGCAGATATCATTAACGGAAAGGATCAAGGCAGCGCAGATAGAAGTGAAAAGAAGCACAAGAAAAAGAAAAACAAAGATGCTCAAGAAGAATAG 1830 0.4388 MTLSTAISPSLTESKKKKNRNKNGGAEEDESTEQQKQPDFMIKPSTRASSIDTSEWPILLKNYDRLNIRTGHYTPLPAGHSPLKRPLNDYLKYGVLNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTVYESKMLEYDADRHLVVFWISCEAGTYVRTMCVHLGLLLGVGSHMQELRRVRSGIMGEKDNMVSMHDVMDAQWVYDNNRDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIDAGEEVVLMTTKGEAIALGIAEMTTAVMASCDHGVVAKIKRVVMDRDTYPRKWGLGPRASTKKKLIALGKLDKHGKPNAHTPEEWVRNVEVLPAGWDSAIAAKAAATETEDGKKVVAEDGEGRKRKIHEDADSPAPAKKSKVAEVEDEEKVKTVNVDEAAVDVEEDKKEKKKKKKKKDKENDDAASSDEEKVVKEKKKKNKDKGDDGSSEADKSEKKKKKQKEKVEEASPEVEKFEKKKKKKKDKDDAADIINGKDQGSADRSEKKHKKKKNKDAQEE 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00989 609 NCBIfam uncharacterized domain 2 296 372 IPR004521 GO:0003723
Vifa6g00989 609 CDD PseudoU_synth_hDyskerin 92 274 - -
Vifa6g00989 609 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 15 569 IPR004802 GO:0006396
Vifa6g00989 609 CDD PUA_Cbf5 299 373 - -
Vifa6g00989 609 MobiDBLite consensus disorder prediction 441 594 - -
Vifa6g00989 609 Pfam tRNA pseudouridylate synthase B C-terminal domain 231 297 IPR032819 -
Vifa6g00989 609 ProSiteProfiles PUA domain profile. 300 375 - -
Vifa6g00989 609 Pfam DKCLD (NUC011) domain 53 110 IPR012960 -
Vifa6g00989 609 FunFam H/ACA ribonucleoprotein complex subunit CBF5 86 292 - -
Vifa6g00989 609 MobiDBLite consensus disorder prediction 13 36 - -
Vifa6g00989 609 Pfam PUA domain 301 373 IPR002478 GO:0003723
Vifa6g00989 609 SUPERFAMILY PUA domain-like 300 381 IPR015947 -
Vifa6g00989 609 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 60 385 IPR004802 GO:0006396
Vifa6g00989 609 SUPERFAMILY Pseudouridine synthase 53 298 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa6g00989 609 MobiDBLite consensus disorder prediction 1 48 - -
Vifa6g00989 609 Gene3D PUA domain 53 384 IPR036974 GO:0003723
Vifa6g00989 609 MobiDBLite consensus disorder prediction 441 609 - -
Vifa6g00989 609 Gene3D Pseudouridine synthase 86 292 - -
Vifa6g00989 609 SMART pua_5 301 375 IPR002478 GO:0003723
Vifa6g00989 609 SMART DKCLD_2 52 110 IPR012960 -
Vifa6g00989 609 Coils Coil 487 514 - -
Vifa6g00989 609 Pfam TruB family pseudouridylate synthase (N terminal domain) 114 230 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00989 Vifa-Chr6 329851858 329853687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00989 15 472 NAC Transcription Factor Family AT3G57150 80.435 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00989 K11131 - gmx:100806355 739.954