Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00983 ATGGTGGTGATCATGCAAGAGCAACAACATCAACCCCATCAGCAGCAGCAGAATCCTTCTGTACTGTTGCCAAACCTCACCACCGCCTCCCTTAGGTCACCATCGTCCACCTCCGCCGCCTCCCAATCTCATCTTTGTTCGCCTATCCACATCACTTCCCACCGCCAACCGCTACCCCCGCAACTTCCGGCGCCGGTCACGACTGTTCTCCCGTCCGGGGAGGCAGTTTCGACGGCGCCACCAAATTTGCAGTTGGCAAGGGTCCGTTTGTCGGACATTGCTCCGTATGACGGTGCACCGTCGGGGCCTTATGTCAGGGCAATGGAAATGCTTTGTTCGTCTCTGTTGAAGCATAATGCGGCGTTGATTGAATTAGGGAGTGAAGAGACTGCTCTGATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTCAGGAGTAGAGCACATCTCGGTGTTGGAAAGGGAAGTCGCGGGGTTTACATGTATAGGGCAGGAAGGGCTTTGGAGGATTGGGATTCATCTCCTCCTTGCATGGCTGATATTTTCAGGTGCATGGGAAAGGCTTCTCGAGTTGCTCTGTCAGCCATTGCAAGGCATCTGCGATTGAGAAGCGATGTTTTTAACCAACTGCTTGATGATGCTCCATTACCTGCTAATGAGGTGTCTTCTTCTGTTCTTGTTGGAACCTATTCACACGCTTCTTTGCAAAATGGAAAAGGTGCCATTGGCGGTGGTAAGCCAAGCGTCAATGGTGAAAACGAGAAGGGATTATTGACCTTGATATCTTCTGACACTCCTGGTTTTCAGGTATGTGATCCCAATGGCCGCTGGTATCTGGCAGACAGTGGATCTGGGCCCGGAGATCTTTTGCTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAAGTCTACATCCCGCCGCATCATATAGAGCTTCTCCAGATTGTTTTCTGAGTCCGAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATACTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTCCTCAAGGCTATGTTCCAATATCTGTAAGCCAGTTTATGGACGACCTTGCTGCTGAAGAACTGATAGGCAGCCAATGTGCTAATGATGATGTTGCCCAAAGCAATGTGAATAAGGACCCATCATTAAGAAGTGTTCTATCAGATCCTTTGTCTGGCTCATTCTTGGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACACTGAGAAGAGTCATTGAAACATCAAGATGCACCCTCTGCAATGTTGATATTGAGACTGGTTCTGTGATCCCTAATCTCGCTCTTAGAGCTGCAGCTGCTGCTGTTAAGCATGAGGATGATCGAAGGTTATTTCGAAATGCCGCTCTTCGAAAGCGGCGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCTACTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACACCTGAAAAATTTGTTGGGAAAGAAGCTGTAATTACGTCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGATCTGGAGAGAATGTCCGCCTGCAGTATCGTTCTCTCAGGAAGCTCTTGAACTCACCAGCTATGGAAGACCAGCAGTTGCAGCTAGTTCAAAATAGCAGCTCTTAA 1755 0.4775 MVVIMQEQQHQPHQQQQNPSVLLPNLTTASLRSPSSTSAASQSHLCSPIHITSHRQPLPPQLPAPVTTVLPSGEAVSTAPPNLQLARVRLSDIAPYDGAPSGPYVRAMEMLCSSLLKHNAALIELGSEETALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNQLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPSVNGENEKGLLTLISSDTPGFQVCDPNGRWYLADSGSGPGDLLLITGRALSHATASLHPAASYRASPDCFLSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQGYVPISVSQFMDDLAAEELIGSQCANDDVAQSNVNKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIETGSVIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSTDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNSPAMEDQQLQLVQNSSS 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00983 584 SUPERFAMILY RING/U-box 394 460 - -
Vifa6g00983 584 Gene3D - 158 373 IPR027443 -
Vifa6g00983 584 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g00983 584 SUPERFAMILY Clavaminate synthase-like 173 365 - -
Vifa6g00983 584 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 84 572 - -
Vifa6g00983 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 462 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00983 Vifa-Chr6 329402561 329416927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00983 394 581 Plant U-box Gene Family AT5G05230 40.526 4.83e-39 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00983 - - gmx:100807199 894.804