Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00982 ATGGTGGTGATCATGCAAGAGCAACAACATCAACCCCATCAGCAGCAGCAGAATCCTTCTGTACTGTTGCCAAACCTCACCACCGCCTCCCTTAGGTCACCATCGTCCACCTCCGCCGCCTCCCAATCTCATCTTTGTTCGCCTATCCACATCACTTCCCACCGCCAACCGCTACCCCCGCAACTTCCGGCGCCGGTCACGACTGTTCTCCCGTCCGGGGAGGCAGTTTCGACGGCGCCACCAAATTTGCAGTTGGCAAGGGTCCGTTTGTCGGACATTGCTCCGTATGACGGTGCACCGTCGGGGCCTTATGTCAGGGCAATGGAAATGCTTTGTTCGTCTCTGTTGAAGCATAATGCGGCGTTGATTGAATTAGGGAGTGAAGAGACTGCTCTGATGCGATGTGGATTGGAAGGTGCTAGATTGTTCTTCAGGAGTAGAGCACATCTCGGTGTTGGAAAGGGAAGTCGCGGGGTTTACATGTATAGGGCAGGAAGGGCTTTGGAGGATTGGGATTCATCTCCTCCTTGCATGGCTGATATTTTCAGGTGCATGGGAAAGGCTTCTCGAGTTGCTCTGTCAGCCATTGCAAGGCATCTGCGATTGAGAAGCGATGTTTTTAACCAACTGCTTGATGATGCTCCATTACCTGCTAATGAGGTGTCTTCTTCTGTTCTTGTTGGAACCTATTCACACGCTTCTTTGCAAAATGGAAAAGGTGCCATTGGCGGTGGTAAGCCAAGCGTCAATGGTGAAAACGAGAAGGGATTATTGACCTTGATATCTTCTGACACTCCTGGTTTTCAGGTATGTGATCCCAATGGCCGCTGGTATCTGGCAGACAGTGGATCTGGGCCCGGAGATCTTTTGCTGATAACAGGCCGGGCGCTTAGCCATGCTACTGCAAGTCTACATCCCGCCGCATCATATAGAGCTTCTCCAGATTGTTTTCTGAGTCCGAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATACTAGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTCCTCAAGGCTATGTTCCAATATCTGTAAGCCAGTTTATGGACGACCTTGCTGCTGAAGAACTGATAGGCAGCCAATGTGCTAATGATGATGTTGCCCAAAGCAATGTGAATAAGGACCCATCATTAAGAAGTGTTCTATCAGATCCTTTGTCTGGCTCATTCTTGGAAGATGCAATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCACACTGAGAAGAGTCATTGAAACATCTGGGTGCTGCTGGAAGATTAGTAGCTACAACAAAATAGGAAGTTTGATAGTTAGGCTCAGGATTGTATGCGGGCTAAGGGTAGGGAATATATTAAATTGTTCTTTAATGTATAGAATAAATGTTTCATATGGGGTAGGGGAGTCTTGGTACGAAGGTTGGAGTTACTGCCGAGGTCAGAAATTCAAATCACGGGCCTCTTGCAAATGCAAGGTAATGTTGCTTACTGTAAATCCACCACCCGGCTCTTCCCTGAATCTTGCCACGATAGGTGTTTTCTATTGCACCATCATGCCCTTTAATGAACTTAAATTTTGGGAATGA 1614 0.4771 MVVIMQEQQHQPHQQQQNPSVLLPNLTTASLRSPSSTSAASQSHLCSPIHITSHRQPLPPQLPAPVTTVLPSGEAVSTAPPNLQLARVRLSDIAPYDGAPSGPYVRAMEMLCSSLLKHNAALIELGSEETALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKASRVALSAIARHLRLRSDVFNQLLDDAPLPANEVSSSVLVGTYSHASLQNGKGAIGGGKPSVNGENEKGLLTLISSDTPGFQVCDPNGRWYLADSGSGPGDLLLITGRALSHATASLHPAASYRASPDCFLSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQGYVPISVSQFMDDLAAEELIGSQCANDDVAQSNVNKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSGCCWKISSYNKIGSLIVRLRIVCGLRVGNILNCSLMYRINVSYGVGESWYEGWSYCRGQKFKSRASCKCKVMLLTVNPPPGSSLNLATIGVFYCTIMPFNELKFWE 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00982 537 Gene3D - 158 373 IPR027443 -
Vifa6g00982 537 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 84 436 - -
Vifa6g00982 537 MobiDBLite consensus disorder prediction 1 20 - -
Vifa6g00982 537 SUPERFAMILY Clavaminate synthase-like 174 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00982 Vifa-Chr6 329402561 329406435 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00982 394 434 Plant U-box Gene Family AT5G05230 46.341 2.98e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00982 - - gmx:100807199 650.588