Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00980 ATGAGCTCTCGGACGAGCAAGCCGACTTCTGTCAGAAGTTACCGGCGTAGGAAGACAGTTTTGGACCTTGACCTTAACAGAGTACCCGCTGGTGAGAATCGGGAGCAGGAGGGAACTTCAACTCAGTTGGAGCCTCAAGTAGTAGAAACTCAAGCCAACAACCAGCAACAACAACAAGCCAACAACCATCAACAACCCCCGTTGATTGATGTGGAGGCCATTGATGATGATGTTATTGAATCTTCCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCGGGAGGACTATAGTTGATGTGGATTTAGAGCAGACTAGGGTAAACAACATTAATCGCAACAAGCGCAGAAGAGAACCTCCAAATGGAACCATTATCAATTGTGATCTTTATATTAATTTGGAAGGCAGTAGCAGCTCTCTGGTGGAAAGTGTCAAAAAGCTACCCGAGCCTCCCAAGGAACCTGTCTTCAATTGTCCTATATGCATGGGCCCTTTGGTTGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGGCATGTATCAAGTCTGCAATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACCGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTGGTTAA 654 0.445 MSSRTSKPTSVRSYRRRKTVLDLDLNRVPAGENREQEGTSTQLEPQVVETQANNQQQQQANNHQQPPLIDVEAIDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEQTRVNNINRNKRRREPPNGTIINCDLYINLEGSSSSLVESVKKLPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKACIKSAISAQAKCPTCRKKITVKELIRVFLPTTG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00980 217 SMART ring_2 162 199 IPR001841 -
Vifa6g00980 217 ProSitePatterns Zinc finger RING-type signature. 177 186 IPR017907 -
Vifa6g00980 217 MobiDBLite consensus disorder prediction 15 31 - -
Vifa6g00980 217 Pfam Zinc finger, C3HC4 type (RING finger) 161 199 - -
Vifa6g00980 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 215 IPR013083 -
Vifa6g00980 217 MobiDBLite consensus disorder prediction 1 45 - -
Vifa6g00980 217 SUPERFAMILY RING/U-box 161 206 - -
Vifa6g00980 217 ProSiteProfiles Zinc finger RING-type profile. 162 200 IPR001841 -
Vifa6g00980 217 PANTHER ELFLESS, ISOFORM B 2 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00980 Vifa-Chr6 327819570 327821499 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00980 12 216 C3H Transcription Factor Family AT5G48655 52.153 9.46e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00980 K22651 - gmx:100306616 288.5