Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00979 ATGAGCTCTCGGACGAGCAAGCCGACTTCTGTCAGAAGTTACCGGCGTAGGAAGACAGTTTTGGACCTTGACCTTAACAGAGTACCCGCTGGTGAGAATCGGGAGCAGGAGGGAACTTCAACTCAGTTGGAGCCTCAAGTAGTAGAAACTCAAGCCAACAACCAGCAACAACAACAAGCCAACAACCATCAACAACCCCCGTTGATTGATGTGGAGGCCATTGATGATGATGTTATTGAATCTTCCCCAAGGGCTTTTGCTGAGGCTAAAAACAATTCTAGAAGAAATCGCGGGAGGACTATAGTTGATGTGGATTTAGAAGAGCAGACTAGGGTAAACAACATTAATCGCAACAAGCGCAGAAGAGAACCTCCAAATGGAACCATTATCAATTGTGATCTTTATATTAATTTGGAAGGCAGTAGCAGCTCTCTGGTGGAAAGTGTCAAAAAGCTACCCGAGCCTCCCAAGGAACCTGTCTTCAATTGTCCTATATGCATGGGCCCTTTGGTTGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGGCATGTATCAAGTCTGCAATAAGTGCTCAGGCTAAATGTCCTACCTGTAGAAAAAAGATTACCGTGAAAGAGCTTATAAGGGTGTTTCTCCCAACAACTGGTTAA 657 0.4444 MSSRTSKPTSVRSYRRRKTVLDLDLNRVPAGENREQEGTSTQLEPQVVETQANNQQQQQANNHQQPPLIDVEAIDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQTRVNNINRNKRRREPPNGTIINCDLYINLEGSSSSLVESVKKLPEPPKEPVFNCPICMGPLVEEMSTRCGHIFCKACIKSAISAQAKCPTCRKKITVKELIRVFLPTTG 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00979 218 Pfam Zinc finger, C3HC4 type (RING finger) 162 200 - -
Vifa6g00979 218 ProSitePatterns Zinc finger RING-type signature. 178 187 IPR017907 -
Vifa6g00979 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 217 IPR013083 -
Vifa6g00979 218 MobiDBLite consensus disorder prediction 15 31 - -
Vifa6g00979 218 ProSiteProfiles Zinc finger RING-type profile. 163 201 IPR001841 -
Vifa6g00979 218 SMART ring_2 163 200 IPR001841 -
Vifa6g00979 218 MobiDBLite consensus disorder prediction 1 45 - -
Vifa6g00979 218 PANTHER ELFLESS, ISOFORM B 2 217 - -
Vifa6g00979 218 SUPERFAMILY RING/U-box 162 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00979 Vifa-Chr6 327819570 327821499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00979 12 217 C3H Transcription Factor Family AT5G48655 52.404 9.57e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00979 K22651 - gmx:100306616 293.893