Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00947 ATGGACAACATTCTAGGCCTTATCAGACTTCGTATCAAAAAAGGCACTAATCTCGTACCTTGTGATTCTCGTACCAGTGACCCTTATGTTCTTATCACCATGGCTCAACAGACACTGAAAACTGCTGTTGTGAAAGATAACTGTCATCCCGAATGGAACGAAGAATTGACACTTTTTATTCAAGATAAAGATCTTAAGACAAAAACACCGATACAACTTACCGTTTGCGACAAAGACACGTTCAGTGTGGACGACAAAATGGGCGAAGCGGACATAGACATAAAGCCGTATCTTCAGTGTGTGAAGATGGGACTGACTGACGTCCCGGAAGGACATGTTGTCAAGATCGTTCAACCAGATAGGACTAACTGTTTAGCCGAAGAGAGTAGATGTATATGGAGAAACGGAAAACTCGTCCAAGAAATGAGTTTACGGTTGAGAAATGTTAAATCTGGTGAAGTATTCGTCGAAATTGAATGGATCGATGTTACAGATTCCAAAGGCTTATCTGAGGTTGAGTTATAG 525 0.4114 MDNILGLIRLRIKKGTNLVPCDSRTSDPYVLITMAQQTLKTAVVKDNCHPEWNEELTLFIQDKDLKTKTPIQLTVCDKDTFSVDDKMGEADIDIKPYLQCVKMGLTDVPEGHVVKIVQPDRTNCLAEESRCIWRNGKLVQEMSLRLRNVKSGEVFVEIEWIDVTDSKGLSEVEL 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00947 174 Gene3D C2 domain 5 109 IPR035892 -
Vifa6g00947 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 167 IPR044562 -
Vifa6g00947 174 Pfam C2 domain 7 96 IPR000008 -
Vifa6g00947 174 SMART C2_3c 7 106 IPR000008 -
Vifa6g00947 174 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Vifa6g00947 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 161 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00947 Vifa-Chr6 323911503 323912189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00947 39 170 C2H2 Transcription Factor Family AT1G70790 52.985 6.18e-43 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00947 - - gmx:100781585 270.396