Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00943 ATGTCTGATTCTTTCTGTAGTTTTCTCTCAACCACTCCAAATTCCAACCATAATTCTCATGCACCTTCAAAAATCTCTTCCATGGTTCAACCTTATTGCATTTGTACACATTGCAATCATCTCCTTCCCTTCAATCACCACGCCGGAACATTCGAGTGCAGGGGCGCTAACCAAGGTCCAAGCAATACTATGCAGCCACAGCAAAGCTCAAGGTGGAGTCCAACTCCAGTTCAATTATTAGTCCTTGAAGAATTGTATAGGAAAGGCATGAAAACACCATCAGCTGAACAAATCCAACAAATAGCTTTGCAGCTTCGTCAATTCGGGAAGATCGAAGGAAAAAACGTGTTCTACTGGTTCCAGAATCACAAGGCAAGAGAGAGGCAGAAGCGTCGTCGCCGGGAGATGGAGGAAACAACTGGTTCTTCAACTGAAGATAAAAAAGAGAAAGACAAGTACGTTATGAGCAATTCAGAACCTGCAGGATTGAAAGAGACATGTAGTGGAGTTAAAGAGACAAAGAAGTGGGCAACCACTTCAAACTGCAGTGAACAAGTAGAGAATATAGTCGAAAAAGGATCAATACAAGTTTTGAGGAAAAACGTAGCTGGAGAAAGTGAAGGAAAGTGTCAAAATATTGAGATTCCTTATTACTTCACACATTTTACTTCGGCAGCGTATAGAACATGTAGTAATAGTAACACGCCTCAAATCTATGATTTATTACCATTTAACAAAGAAAATTTCAACTATTATGAAGAAGAAAATGAAGGTCTTAGGACACTTGATCTTTTTCCAGTTAAGGAGGATGAACAAGATGGAAAATCTATGTTGTGTGTTAATGATTCTATGAACACTGAAGTCACATCTTCTTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAATTGA 912 0.3893 MSDSFCSFLSTTPNSNHNSHAPSKISSMVQPYCICTHCNHLLPFNHHAGTFECRGANQGPSNTMQPQQSSRWSPTPVQLLVLEELYRKGMKTPSAEQIQQIALQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEETTGSSTEDKKEKDKYVMSNSEPAGLKETCSGVKETKKWATTSNCSEQVENIVEKGSIQVLRKNVAGESEGKCQNIEIPYYFTHFTSAAYRTCSNSNTPQIYDLLPFNKENFNYYEEENEGLRTLDLFPVKEDEQDGKSMLCVNDSMNTEVTSSSNQFFEFLPLRN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00943 303 CDD homeodomain 71 125 IPR001356 GO:0003677
Vifa6g00943 303 ProSiteProfiles 'Homeobox' domain profile. 65 130 IPR001356 GO:0003677
Vifa6g00943 303 SMART HOX_1 67 134 IPR001356 GO:0003677
Vifa6g00943 303 Pfam Homeodomain 69 129 IPR001356 GO:0003677
Vifa6g00943 303 SUPERFAMILY Homeodomain-like 62 132 IPR009057 -
Vifa6g00943 303 MobiDBLite consensus disorder prediction 131 155 - -
Vifa6g00943 303 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 56 294 IPR044555 GO:0003700|GO:0099402
Vifa6g00943 303 FunFam WUSCHEL-related homeobox 11 69 136 - -
Vifa6g00943 303 Gene3D - 69 136 - -
Vifa6g00943 303 MobiDBLite consensus disorder prediction 127 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00943 Vifa-Chr6 322385827 322387572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00943 69 187 Wox Gene Family AT3G18010 55.738 6.18e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vifa6g00943 Homeodomain 1.2e-18 CL0123