Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00933 ATGTTAACGAATTGGTATACTACAGAAACGAGACTTCGTGAGTTCAGGGACTTGAGAACGGAGCAAAAGACGGGGAAACTGAACTCTCTTCCAAAAAGAGATGCCACTATGTTGAAGAGACAATTATCTCATTTGGAAAGATATCTAGGCGGTATAAAATATATGACAAGATTACCTGATATTGTAATAATCCTTGATCAGCAAGAAGAATATACGGCTCTTCAAGAATGTATCACTTTGGGAATTCCAACGATTTCTTTAATTGATACAAATTCTGACCCAGATCTTGCAGATATTTCGATTCCGGCTAATGATGATGCTATAGCTTCCATCGGATTAATTCTTAACAAATTAGTTTTTGCAATTTGTGAGGGTCGTTCTAGCTATATACAAAAAAATTGA 402 0.3557 MLTNWYTTETRLREFRDLRTEQKTGKLNSLPKRDATMLKRQLSHLERYLGGIKYMTRLPDIVIILDQQEEYTALQECITLGIPTISLIDTNSDPDLADISIPANDDAIASIGLILNKLVFAICEGRSSYIQKN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00933 133 PRINTS Ribosomal protein S2 signature 97 111 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa6g00933 133 PRINTS Ribosomal protein S2 signature 59 76 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa6g00933 133 PRINTS Ribosomal protein S2 signature 76 87 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa6g00933 133 FunFam 30S ribosomal protein S2 3 52 - -
Vifa6g00933 133 Pfam Ribosomal protein S2 1 125 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vifa6g00933 133 NCBIfam 30S ribosomal protein S2 1 127 IPR005706 GO:0003735|GO:0006412|GO:0015935
Vifa6g00933 133 Gene3D - 53 133 - -
Vifa6g00933 133 SUPERFAMILY Ribosomal protein S2 1 129 IPR023591 -
Vifa6g00933 133 ProSitePatterns Ribosomal protein S2 signature 2. 59 83 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vifa6g00933 133 Gene3D Helix hairpin bin 1 52 - -
Vifa6g00933 133 PANTHER 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR 1 132 IPR005706 GO:0003735|GO:0006412|GO:0015935
Vifa6g00933 133 CDD RPS2 1 124 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00933 Vifa-Chr6 320888765 320889166 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00933 59 128 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 31.429 8.60e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00933 K02967 - cpap:5878370 232.261