Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00928 ATGGACGAGCCTAGTACTAGTACTAGCAGCAACGTTATGCATTCAGATTTCGTGGAAATAACAATAGATGTGCACCAAGTCGTTCCACCACCACACGTAAGCACTCTACAAAGAATCAAAATCAAACTCAAGGAAACCTTTTTCCCCGACGATCCTATACGACAATTCAAAGGAAAAACTCTCAACACCAAACTCATCCTTGGAGCTCAATACTTTTTCCCTATTCTTCAATGGTTACCTAATTACAGTTTCAATCTCTTTAAATCTGATCTTGTTGCCGGCCTCACTATTGCCAGCTTAGCCATTCCGCAAGGAATTAGTTACGCCAAGCTTGCAACTCTTCCTCCGATTATAGGACTCTATTCGAGTTTTGTTCCACCGTTAGTTTATGTTGTTCTTGGAAGCTCCAAAGATCTTGCTGTAGGACCTGTTTCCATTGCGTCTCTTGTGATGGGATTCATGATTGCAGAGGAAGTGTCTCCCACAACACAGTCTGATCTATTCATTCAGTTAGCTTTTACTTCAACGTTTTTTGCTGGTATTTTTCAAGCTACTCTTGGAATTTTAAGGTTGGGTTTTATCATTGATTTTCTATCGAAGGCGATTTTACTTGGGTTTACGGCTGGAGCGGCTGTAATTGTGTCTCTGCAACAGCTAAAGGCTTTACTTGGAATCACACATTTCACTAAAAAGATGGCTATTATTCCTGTCATGTGTTCTGTTTTTGACAATATTCATGAGTGGTCATGGGAAACAATAGTGATGGGGGCTTCCTTCTTAGGGATACTTCTGATTGCAAGACAAATTAGCATAAGGAAGCCACAGTTATTCTGGGTGTCAGCTGGAGCTCCTCTTGCATGTGTCATCATCTCCACTATCCTCACTTTTGTAATCAAGGGTCAAAAACATAGCATCAGTATAGTTGGGAAATTGCAACAAGGAATAAATCCTGCTTCAGCCGACATGTTGCTTTTTAGTGGAGATTATCTTGGCCTAACCATCAAAACCGGAATTGTCAGTGGCATTTTAGCACTCACTGAAGGAATTGCAGTGGGGAGAACATTTGCAACTCTAAGAAACTACAAGTTGGATGGAAATAAAGAAATGATGGCAATTGGGTTCATGAATGTGGTTGGCTCTACCACATCATGCTATGTCACAACAGGATCTTTTTCTCGGTCAGCTGTAAATCATAACGCGGGCGCAAAAACAGCGATGTCGAACTTAGTAATGGCTGTGACAGTCATGGTGACACTCCTTTTTCTTATGCCGTTATTTCGATTCACGCCTAATGCTGTATTGGGTGCAATCATAATAACAGCAGTAGTTGGCCTTATTGATATCCCTGCTGCTCTTCTCATTTGGAAGCTCGACAAATTCGATTTCATTGTGTTGTTGACTGCTTTTTTGGGTGTTATTTTCATCTCTGTCCAATATGGCCTCGCTCTCGCGGTGGGATTGTCAATTTTTAGGATCCTTATGCAAATTACAAGGCCTAAGACAGCAATGTTAGGGAACATACCAGCGACAACCATATATAGAAATATTCACCATTATAAAGAAGCTACAAGAGTACCTGGTTTTCTAATTTTGAGTATAGAGGCTCCAATCAATTTTGCTAATATTACATATCTCCATGAGAGGATGTTACGGTGGATAGAAGAAGAAGAGGACACCAAAACAGAAAACTCATGCCTTCAATATGTGATTCTTGAAATGTCAGCTGTGAGTTCCATAGACACAAGTGGAGTTTCACTTTTCAAGGAGTTGAAAGTAGCATTGGAAATAAAAGGTGTCGAGCTTATATTGGTGAATCCTCTAGCTGAGGTTATTGAAAAGCTGAAAAAAGCAGATGAAGATAACGATTTCGTACGACCAGATTACCTTTTCTTGACAGTTGGAGAGGCCGTAGCTGCACTTTCATCAGCAAGGAAAAGGCAATCGCAAACCATAGAAGAGATAGAATAG 1968 0.405 MDEPSTSTSSNVMHSDFVEITIDVHQVVPPPHVSTLQRIKIKLKETFFPDDPIRQFKGKTLNTKLILGAQYFFPILQWLPNYSFNLFKSDLVAGLTIASLAIPQGISYAKLATLPPIIGLYSSFVPPLVYVVLGSSKDLAVGPVSIASLVMGFMIAEEVSPTTQSDLFIQLAFTSTFFAGIFQATLGILRLGFIIDFLSKAILLGFTAGAAVIVSLQQLKALLGITHFTKKMAIIPVMCSVFDNIHEWSWETIVMGASFLGILLIARQISIRKPQLFWVSAGAPLACVIISTILTFVIKGQKHSISIVGKLQQGINPASADMLLFSGDYLGLTIKTGIVSGILALTEGIAVGRTFATLRNYKLDGNKEMMAIGFMNVVGSTTSCYVTTGSFSRSAVNHNAGAKTAMSNLVMAVTVMVTLLFLMPLFRFTPNAVLGAIIITAVVGLIDIPAALLIWKLDKFDFIVLLTAFLGVIFISVQYGLALAVGLSIFRILMQITRPKTAMLGNIPATTIYRNIHHYKEATRVPGFLILSIEAPINFANITYLHERMLRWIEEEEDTKTENSCLQYVILEMSAVSSIDTSGVSLFKELKVALEIKGVELILVNPLAEVIEKLKKADEDNDFVRPDYLFLTVGEAVAALSSARKRQSQTIEEIE 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00928 655 FunFam Sulfate transporter 31 498 643 - -
Vifa6g00928 655 Pfam Sulfate permease family 87 466 IPR011547 GO:0016020
Vifa6g00928 655 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
Vifa6g00928 655 NCBIfam sulfate permease 74 636 IPR001902 GO:0016020|GO:0055085
Vifa6g00928 655 PANTHER SULFATE TRANSPORTER 37 643 IPR001902 GO:0016020|GO:0055085
Vifa6g00928 655 CDD STAS_SulP_like_sulfate_transporter 519 632 - -
Vifa6g00928 655 Pfam STAS domain 519 636 IPR002645 -
Vifa6g00928 655 SUPERFAMILY SpoIIaa-like 523 640 IPR036513 -
Vifa6g00928 655 Gene3D STAS domain 498 643 IPR036513 -
Vifa6g00928 655 ProSiteProfiles STAS domain profile. 518 640 IPR002645 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00928 Vifa-Chr6 318311581 318315016 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00928 19 649 Inorganic Solute Cotransporters AT3G15990 62.243 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00928 K17471 - gmx:100779433 979.933