Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00925 ATGGATGATGAAGTTGTTCAGCGAGTTTTCCATGAAGGAGGACGCGATTACTTCCAGCAACAGCCTTCAACTTCTTCCTCTTCCATCCTTCAATCTCTCCCTCTCCATGTGTCTTTTGATCATGGATATTATTTGTTGGTAAAATCTATCCAAGAACTGCGAGAGAAAAAGGATGGGCTTGTTACAGTTGGCATCGGTGGTCCGAGCGGTTCTGGTAAAACAAGCTTAACTGAGAAGGTGTCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAAGGAAATGTTTTGGATTCTATAGATTTTGTTACCCTTATCAAGAATCTCGAGGATTTGACAAAAGGCAAGGATACATTAATTCCAGAGTTTGATTATCAGCAAAAGAGACGCATAGGCTATAAAAAAATAATGAGTACTTCATCTGGAGTGGTAATAGTTGATGGTACATATGCATTGCACGCAAAACTACGGTCTTTACTGGATATTCGAGTTGCAGTGGTTGGTGGTGTTCATTTTAGCCTACTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCATTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAACAACAGCTTTGTGTCATCATTTAGAGAGGCAATCTACAAGGTTAAATGCAGAAGCAAGTCTTCAGATGGATATCCAGGTTCTTCCTCTCAAGGAAATCAAGCTCAAACAGATAATTTTATTGAAATGTACCTTAGACCACCTTCGGCGAGTGAAGAAGCAGGGATAAATGATTGGATTAAAGTGCGGCAGTCTGGAATTAGGTATTATTTATCCCTTGGTGACCAGAGAATTGTTGACAAGAATTTCATTATCAGGCCAAAAGCTGAGTTTGAGGTTGGACGAATGACATTGGGTGGGTTGCTGGCTCTTGGGTACGTTGTTGTGGTTAGTTATAAACGCGCATCCACAACGGTCAATTATGGCAAGGTTTCAATGTCGTTTGAAACCATTGATGTTCTTGGGGAGACATTCTTGGTCACGAGAGGAACCGATAGGAAGACTGTTGGAACAGAAGCATTGAAGATGGGTATCAATGGACCTTGGATTACTAAATCATATCTTGAAATGATTCTTGAGAGAAAAGGTGTACCCCGTCTTAGTACGCCACCACTTGTGTCTAATACAACTGTGACTGGCAGTCAAGAAACAACAATCGTTGCACCAAAGCCAATTCGTGTTACCCCTAACCTTGTTACTGGCCTCGAGGATTTATCTCAGCCATGGACCCGATCCCCAACAAAATCCCAAATAGAACCTTTTGTGGCTACATGGCGTTTCATATCTTCAGATTCCTCCCATATTGGCAACACAGTCCTAGATCCCTCATCTTTCAGGGACACTGTTAGGCTTGCTCCCATGCCTGATTCGTATGACCTGGACAGGGGATTGCTTTTGGCAGTACAAGCAATACAAGCTTTGTTAGAGAATAAAGGTGTTCCGGTCATTGTTGGAATTGGTGGTCCAAGTGGGTGTGGGAAGACAAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAATAATTTCCCTAGAAAGCTATTACAAACAAGTAAAGGACTTTAAATATGATGATTTCAACTCACTTGATTTATCTTTGCTATCAAAGAATATCGATGACATAAGAAATGGACGAAGAACAAAAGTACCTATATTTGACTTAGAAAGTGGTGCTCGGAGTGGCTTCAAGGAACTGGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCGTTGCATCCGGATATCCGAATGTCACTTGACTTGTGGATTGCTGTTGTAGGAGGCGTTCATTCGCATTTGATTTCACGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATTTCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAACAACTTATTGAACCCCATCTTGTTCATGCACATCTGAAAATTCGAAACGACTTTGACCCTGTGCTTTCTCCCGAGAGTTCACTGTTTGTATTGAAGAGTAACAGAAAAGTGGCTTATCAAGACATTCTATCCATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATCGATATTTACATGAGGCTTCCTGGGATCCCTTCTAATGGTCAACTGACAGATAGTGATTGTATTCGGGTTAGAATATGTGAAGGCAGATTTGCATTACTGATACGTGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTACTACGGTTGCCGGTCTTCTAAACCTTGGGTATCAAGCAGTTGCTTATATTGAAGCGTCTGCATTCATCTACCAGGATGGAAAGATTCTAATTGAGGTTGATCATCTACAAGATGTCCCTGGTCCATATATTCAGATAAAGGGTGTTTCTAAGGATGCTGTGGCAGCAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTACCTTGAAATAGTTTTGGAAAGACTACCAACAATGGAGAGAAATTCTGGTGGGATAAACTTTCAGCAATCAACAAGGCTGCTAGAGATTATGGACTTTATTCAATCTCAGGGATGTAGCTCTTCCTCAGAATCCTCATCAAGCAGAGTCTCTCCGATTGAAGGCATTATTGAAGAGATGCAATCAAAGATTAGAAGGCTTGAAAGGTGGCTTGCGATAAATACGGTTCTGTGGACATTTCTAATGTCAGCCATTGTTGGTTATTCACTTTATCAAAGAAGGCGTCAATGA 2850 0.4025 MDDEVVQRVFHEGGRDYFQQQPSTSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKDGLVTVGIGGPSGSGKTSLTEKVSSVIGCTVISMENYCDGVDEGNVLDSIDFVTLIKNLEDLTKGKDTLIPEFDYQQKRRIGYKKIMSTSSGVVIVDGTYALHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSKSSDGYPGSSSQGNQAQTDNFIEMYLRPPSASEEAGINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYVVVVSYKRASTTVNYGKVSMSFETIDVLGETFLVTRGTDRKTVGTEALKMGINGPWITKSYLEMILERKGVPRLSTPPLVSNTTVTGSQETTIVAPKPIRVTPNLVTGLEDLSQPWTRSPTKSQIEPFVATWRFISSDSSHIGNTVLDPSSFRDTVRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGCGKTSLAHKMANIIGCEIISLESYYKQVKDFKYDDFNSLDLSLLSKNIDDIRNGRRTKVPIFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRMSLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNRKVAYQDILSILDPAKFCSSVQKFIDIYMRLPGIPSNGQLTDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVSKDAVAAAGSMLKLDGSYTTKSYLEIVLERLPTMERNSGGINFQQSTRLLEIMDFIQSQGCSSSSESSSSRVSPIEGIIEEMQSKIRRLERWLAINTVLWTFLMSAIVGYSLYQRRRQ 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00925 949 SMART AAA_5 59 209 IPR003593 GO:0016887
Vifa6g00925 949 SMART AAA_5 514 658 IPR003593 GO:0016887
Vifa6g00925 949 PANTHER URIDINE KINASE 494 873 - -
Vifa6g00925 949 CDD UMPK_like 62 224 - -
Vifa6g00925 949 PRINTS Uridine kinase signature 542 553 - -
Vifa6g00925 949 PRINTS Uridine kinase signature 515 532 - -
Vifa6g00925 949 PRINTS Uridine kinase signature 636 646 - -
Vifa6g00925 949 Gene3D - 699 862 - -
Vifa6g00925 949 Pfam Phosphoribulokinase / Uridine kinase family 106 221 IPR006083 GO:0005524|GO:0016301
Vifa6g00925 949 Pfam Phosphoribulokinase / Uridine kinase family 517 682 IPR006083 GO:0005524|GO:0016301
Vifa6g00925 949 CDD UMPK_like 517 685 - -
Vifa6g00925 949 Gene3D - 514 696 IPR027417 -
Vifa6g00925 949 Gene3D - 61 241 IPR027417 -
Vifa6g00925 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 174 IPR027417 -
Vifa6g00925 949 SUPERFAMILY CYTH-like phosphatases 723 857 IPR033469 -
Vifa6g00925 949 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 503 685 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00925 Vifa-Chr6 317505698 317524492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00925 510 673 PRT Gene Family AT1G55810 24.157 8.71e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00925 - - gmx:100778905 1669.44