Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00921 ATGACTAGAAAGAAAGTGAAACTGGCATTCATAACCAACGACTCTTCAAGGAAAGCAACATTCAAGAAAAGGAAGAAAGGCCTAATGAAAAAGGTTAGTGAACTTAGCACCCTATGTGGAATTGATGCTTGTGCAATAATCTATAGTCCCTATGATCCTCAACCAGAAGTTTGGCCATCTCAACCGGGAGTTCAAAGGGTGCTCAACAAGTTTAGAAGAATGCCCGAATTGGAACAAAGCAAAAAGATGGTGAATCAAGAGAGTTTTCTAAAACAAAGGATCGAAAAGGCGAAAGATCAGTTGACAAAACAAAGGAAAGATAATAGAGAAAAAGAAATGACACATCTCATGTTTCAATATCTTAGTGGAGGTAATAATGCAATGAATAATATAAGTATGGCTGATTTAAATGATATGGCATGGTTGATTGATCAATATTTGAAAGAGATTAATAGAAGAGTTGAAATGTTGACCAAGAATTCTCAAAGTCAAGGCCAAATAATGGCTCCACCATTACCAATGTTGGCTAATGGAGTGGCTAAGGTTGAAGAGGTGGGACAAGGGAGTAATAATGGTCAAGGTTTGGTGGATATGAATATGAGTATGAATATGAATATGGAGGTTAATGTTATGCAAAAGCAACCTTGGTTTATGAATTTGATGGATGGTGGTGGTGGTGGTGGAAATGATGGTACACCTCCTTTGGGAAATGTTTCTCAACAAAATGGGTTTTGGCCAAATCCATTTTTCCAATGA 756 0.3717 MTRKKVKLAFITNDSSRKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPYDPQPEVWPSQPGVQRVLNKFRRMPELEQSKKMVNQESFLKQRIEKAKDQLTKQRKDNREKEMTHLMFQYLSGGNNAMNNISMADLNDMAWLIDQYLKEINRRVEMLTKNSQSQGQIMAPPLPMLANGVAKVEEVGQGSNNGQGLVDMNMSMNMNMEVNVMQKQPWFMNLMDGGGGGGNDGTPPLGNVSQQNGFWPNPFFQ 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00921 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa6g00921 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa6g00921 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa6g00921 251 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Vifa6g00921 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Vifa6g00921 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Vifa6g00921 251 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Vifa6g00921 251 Coils Coil 87 114 - -
Vifa6g00921 251 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Vifa6g00921 251 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Vifa6g00921 251 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00921 Vifa-Chr6 316158220 316158975 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00921 1 190 Type I MADS-box Gene Family AT5G48670 58.416 2.18e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vifa6g00921 SRF-TF 3.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00921 - - gmx:100813231 356.295