Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00912 ATGGGGCATAGTTCGAATAAGAAGAAGCGAGGAGGTGGAGGAAGAAGAAACAAGTCAAGAACACCTTCCAAAGACCACACTTCTCAATTCGGAAACGGTGATGATAACGAACAACTCGCCGAAGAGATTACTGCACTATGTGCGATTTTTCAAGAGGATTGCCAAATTGTTCCTGGATCGCCTGCTCAAATAGTTATTAAACTCAGGCCTTACTCGAATGACATGGGTTATGAGGATGTGGATGTGTCTGCTGTTCTTGTTGTTAGGTGCTTGCCTGGGTATCCCTTCAAGTGTCCCAAGTTGCAGGTTACTCCTGAAATGGGTTTATCCCAAACTGATGCTAATAAACTTTTGTCTCTCCTTGTTGATCAGGCCAATTTAAATGCTAGGGAGGGACGAGTAATGATCTTTAATTTAGTTGAGGCTGCTCAAGAATTTCTGTCTAGAATTGAGCCCATTGCCAAACCAACTGAATCTAAGTGTTTACACCCAACTACAGAAGGCATTGGAGAACTGGGTCTCAAAGATATGGCATCTTCAAATAAGAATAGATCTTTTGTTTATGGTTTCGTCGACCTTTTCAGTGGCTATGGAGAGTCTTGGAATTGGGGTTTTGGAATTGATGAAATTGCTGTAAAAAGTTCTTCTATTCCTTCTTCTAAGTTGGATGCCTCCACACTACAAATAGAAACCCGGGAAAAGAAATCCGATTGCAAGGAAGATCCGTTCATATTGCAAGAACTTCCTGTCAAATTAGATACTGTAGGAGAAGTTAGTGAAGATAGCTTATCTTTGACTTGTTCAAGTAGATCTTTGGTGGGTGATTTTACGGGGAACAATACTGAAGGTGAGAAAGAGTATTCTATAGTTGACGAGTATACAACTGAGGATAGCAAAGGTATATCTGACAACGAATCTACAGAGGATAGCAAAGGTATATCTGACAGCGAATCTACAGAGTCTCTGTCTTCTGTGTCCTTGCCTCATCATCAGGCATCTCAAATAGAAAAGGATCTACTAATGGTTCACTTGCTTCGCGTTGCTTTGGCATCTGAAGGCACATTGCCCGACTCTTTGCCCCAAATAGCAACAGAGCTGGACCATTTAGGGTTCGTTTCTGACTCGACACGTGTTATGGCATCAAAACCGTCTTCTCTTTTCAACAAAACCTTTGATCATATCATCAAGAAACAACCGGCATTATCCAAAATATCTCAATTGTGGACATCTTCTTCTGATCTTGGAAGCTCTAATACCGTTCACAATAATTCTCGATATTTAAATGATTTTGAGGAGCTACGCCCCCTTGGTCATGGTGGTTTTGGTCACGTTGTGCTGTGCAAAAATAAACTCGATGGAAGGCAGTATGCAATGAAGAAAATTCGCCTTAAGGACAAAACCATGCGTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAACATCAACATGTTGTTCGATATTATCAGGCATGGTTTGAAACTGGAGTTACTGATTCTTATGGTGATCTTGCTGGAGATTCAAGAACTCCAGCGAGCTCTACTTTCAGTTACAAAGGTGCAAGCTCCAATGATGCTATTGTGCGTGAGAATCGGCTTGAATCAACATATCTTTATATACAAATGGAGTACTGTCCCATGACTCTTCGCCAAATATTTGAATCATATAGTCATTTTGACAAAGAACTGGCATGGCATTTGTTTCGCCAAATAGTAGAAGGTTTGGCACACATACATGGGCAAGGAATAATTCATCGGGACTTAACACCAAGTAACATATTCTTTGATGCTCGCAATGATATTAAAATCGGTGACTTTGGTCTTGCCAAGTTCTTGAAGTTGGAGCAGGTGGATCAAGATCCAACCCATCTTGCTGATACAACTGGAGTTTCCATTGATGGCACTGGACAAGTAGGGACATATTTCTATACAGCTCCTGAAATTGAACAAGGGTGGCCTAAGATTGATGAAAAGGCTGACATGTACAGCTTAGGAGTGATTTTCTTTGAGCTCTGGCATCCATTTGGGACAGCAATGGAGAGACATGTTGTTTTATCCGATCTGAAACAAAAAGCAGGGCTTCCACCTGCTTGGGTTGCTGAGTTTCCTGAACAAGAATCCTTGCTGCGGCAGTTAATGTCTCTAGGTCCCTCAGATCGCCCCTCTGCCACAGAACTTCTGAAGAACGCATTTCCTCCACGAATGGAGTCTGAATTTTTTGACGATATGTTGCGAACAATGCTGAAATCAGAAGATAGAAGCATTTACGATAAAGTTTTAAATGCTATCTTTGATGAAGAAATGTTAAGCTCAAAGCACATTCATCAAGTTGGTAGATTAGGGTCAGTTGGAGATAACAATTCATCCATTCAGCACACAGATTTTGTAACCCAAGTCCGAGATTACATTGTTGATGTCAGCAAGGATATTTTTAGACAACATTGTGCTGAACACCTAAAAATATTACCGATTCGTTTATTGGATGATTGTCCGCAGTTTAATAGAAATACAGTTAAACTTTTGACCCATGGAGGAGACATGCTTGAACTTTCCCATGAGTTGCGTTTGCCTTTTGTAAATTGGATTATATCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATATGTTTACAGGAGAGCTGTTGGGCATTCATCACCAAACTGCTACCTTCAGGGAGATTTTGACATTATTGGTGGCACTTCAGTATTGACGGAGGCAGAGGTCATAAAGGTCACGAAGGACATAGTCACTTGTTTTTTCCATGAAGACTCATGTGACATTCATCTAAATCATGCTGAACTACTGGATGCAATTTGGTCATGGACTGGAATCAGGGTAGAACACAGATTTAAAGTAGCAGAGCTTCTTTCAATGATGAGTTCTTTGCGTCCTCAATCCTCAGAAAGGAAATCAAAATGGGTAGTGATAAGGCGACAACTTTTGCAGGAACTGGGTTTAGTTGAAGCTATGGTGAATAGGTTACAGACAGTAGGTTTGAGATTTTGTGGATCTGCAGATCAGGCACTTCCTAGACTAAGGGGAGCTCTACCATCTGATAAGCGGACTTTAAAGGCACTTGATGAATTGTCTGAGCTTGTCCGTCTCTTGAGAATTTGGAGGATTGACAAAAATGTATATATAGATCCATTAATGCCGCCAAATGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTCAAGGAAGGAGAACAGTCCTGGATCACTCTCTGAGGGTGTCCTGCTAGCTGTTGGTGGTCGATATGACTATTTGCTTCATCAGTTGAGGAGCAGTGACTATAAAGGAAATCCCCCCACTGGTGTGGGGACTAGCCTTGCCCTAGAGACAATAATTCAGAATTGTTCTGTACCCAATCGAAATGAAGCAAGCATCAAAATTCTTGTGTGCTCAAGAGGAGGAGGTGGTCTGTTGGTGGAGCGCATGGAACTAGTTTCTGAATTATGGCGGGAGAACTTTAAGGCCGAATATGTCCCCGTCCCTGATCCAAGTCTTACAGAGCAATATGAGTACGCTAATGAACGTGATATAAAATGTCTCGTTATTATTACAGATGCAGGTTTCTCCCTGACCGATTCAGTTAAGGTTCGACATCTTGAACTTAAGAAGGAGAAAAATGTTGAGAGAGAGAACCTAGTCAAGTTTCTATCAGATGCTATGGCAACACAATTTAGAAACCCCTCCATATGGATTTGA 3726 0.4104 MGHSSNKKKRGGGGRRNKSRTPSKDHTSQFGNGDDNEQLAEEITALCAIFQEDCQIVPGSPAQIVIKLRPYSNDMGYEDVDVSAVLVVRCLPGYPFKCPKLQVTPEMGLSQTDANKLLSLLVDQANLNAREGRVMIFNLVEAAQEFLSRIEPIAKPTESKCLHPTTEGIGELGLKDMASSNKNRSFVYGFVDLFSGYGESWNWGFGIDEIAVKSSSIPSSKLDASTLQIETREKKSDCKEDPFILQELPVKLDTVGEVSEDSLSLTCSSRSLVGDFTGNNTEGEKEYSIVDEYTTEDSKGISDNESTEDSKGISDSESTESLSSVSLPHHQASQIEKDLLMVHLLRVALASEGTLPDSLPQIATELDHLGFVSDSTRVMASKPSSLFNKTFDHIIKKQPALSKISQLWTSSSDLGSSNTVHNNSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAMKKIRLKDKTMRDRILREVATLSRLQHQHVVRYYQAWFETGVTDSYGDLAGDSRTPASSTFSYKGASSNDAIVRENRLESTYLYIQMEYCPMTLRQIFESYSHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQVDQDPTHLADTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVIFFELWHPFGTAMERHVVLSDLKQKAGLPPAWVAEFPEQESLLRQLMSLGPSDRPSATELLKNAFPPRMESEFFDDMLRTMLKSEDRSIYDKVLNAIFDEEMLSSKHIHQVGRLGSVGDNNSSIQHTDFVTQVRDYIVDVSKDIFRQHCAEHLKILPIRLLDDCPQFNRNTVKLLTHGGDMLELSHELRLPFVNWIISNQKSSFKRYEISYVYRRAVGHSSPNCYLQGDFDIIGGTSVLTEAEVIKVTKDIVTCFFHEDSCDIHLNHAELLDAIWSWTGIRVEHRFKVAELLSMMSSLRPQSSERKSKWVVIRRQLLQELGLVEAMVNRLQTVGLRFCGSADQALPRLRGALPSDKRTLKALDELSELVRLLRIWRIDKNVYIDPLMPPNESYHRDLFFQVYSRKENSPGSLSEGVLLAVGGRYDYLLHQLRSSDYKGNPPTGVGTSLALETIIQNCSVPNRNEASIKILVCSRGGGGLLVERMELVSELWRENFKAEYVPVPDPSLTEQYEYANERDIKCLVIITDAGFSLTDSVKVRHLELKKEKNVERENLVKFLSDAMATQFRNPSIWI 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00912 1241 Gene3D Ubiquitin Conjugating Enzyme 29 157 IPR016135 -
Vifa6g00912 1241 FunFam Histidine--tRNA ligase, cytoplasmic 1132 1231 - -
Vifa6g00912 1241 FunFam eIF-2-alpha kinase GCN2 792 1128 - -
Vifa6g00912 1241 SMART RWD2001b 41 150 IPR006575 GO:0005515
Vifa6g00912 1241 SUPERFAMILY Class II aaRS ABD-related 1136 1231 - -
Vifa6g00912 1241 ProSitePatterns Protein kinases ATP-binding region signature. 436 459 IPR017441 GO:0005524
Vifa6g00912 1241 MobiDBLite consensus disorder prediction 285 315 - -
Vifa6g00912 1241 PANTHER HISTIDYL-TRNA SYNTHETASE 795 1235 - -
Vifa6g00912 1241 FunFam eIF-2-alpha kinase GCN2 418 546 - -
Vifa6g00912 1241 SUPERFAMILY Class II aaRS and biotin synthetases 800 1123 IPR045864 -
Vifa6g00912 1241 Gene3D Transferase(Phosphotransferase) domain 1 550 741 - -
Vifa6g00912 1241 SUPERFAMILY UBC-like 35 147 IPR016135 -
Vifa6g00912 1241 Pfam Histidyl-tRNA synthetase 892 1121 IPR041715 -
Vifa6g00912 1241 ProSiteProfiles Protein kinase domain profile. 430 742 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00912 1241 MobiDBLite consensus disorder prediction 284 328 - -
Vifa6g00912 1241 ProSitePatterns Tyrosine protein kinases specific active-site signature. 585 597 IPR008266 GO:0004672|GO:0006468
Vifa6g00912 1241 Gene3D - 1132 1231 IPR036621 -
Vifa6g00912 1241 Gene3D Phosphorylase Kinase; domain 1 417 546 - -
Vifa6g00912 1241 Pfam RWD domain 37 147 IPR006575 GO:0005515
Vifa6g00912 1241 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Vifa6g00912 1241 FunFam eIF-2-alpha kinase GCN2 550 743 - -
Vifa6g00912 1241 MobiDBLite consensus disorder prediction 1 17 - -
Vifa6g00912 1241 Pfam Protein kinase domain 430 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00912 1241 CDD STKc_EIF2AK4_GCN2_rpt2 424 730 - -
Vifa6g00912 1241 SUPERFAMILY Protein kinase-like (PK-like) 426 737 IPR011009 -
Vifa6g00912 1241 Gene3D Bira Bifunctional Protein; Domain 2 795 1130 IPR045864 -
Vifa6g00912 1241 FunFam eIF-2-alpha kinase GCN2 32 156 - -
Vifa6g00912 1241 MobiDBLite consensus disorder prediction 1 35 - -
Vifa6g00912 1241 Pfam Anticodon binding domain of tRNAs 1135 1233 IPR024435 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00912 Vifa-Chr6 307313753 307329209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00912 419 733 MAP Kinase Kinase Kinase AT1G63700 26.154 2.35e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Vifa6g00912 Pkinase 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00912 K16196 - gmx:100797996 1960.27