Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00910 ATGATGTTGTTAGGAAGATGTTTTGTAATCTACGTTTTAATTTTAATGTTATGCTTATGTCGTCATCATGTTTATAGTCTTGGTTCTATGTCATCTATTGCAATCTCGTATGGTGAAAAAGGTTCGGTTTTTTGTGGTTTGAAATCAGATGGATTGAATAGTGTGACATGTTATGGATCTAACTCGGCTATAATGTATGAAACGCCTACGCGTTTTTCGTTTCATGGCTTAACGGGTGGTGATGGATTTGTTTGTGGGCTTTTAATGGATTCGAATCAGCCTTATTGTTGGGGTAATAGTGGGTATATTCAGATGGGTGTGCCTCAACCTATGATTAGAGAAGCTCAGTACTTGGAAATTAGTGCTGGTGATTACCATGTATGTGGATTGAGAAAGGTTAGGAATAGAAATGTTTCTTTGGTGGATTGTTGGGGATATAACATGACTGCAAATTACGTGTTTGATGGAATGATTCAGTCGATTTCAGCAGGTTCTGTGTTTAATTGTGGGTTGTTTTCGAACAATGGGAGTGTTTTTTGTTGGGGTGATGAGACTAGTAGTAAGGTGATTAGTTTGATTCCTCTGAAAATGAAGTTTAGAATGATTTCTGCTGGTGGGTTTCATGTTTGTGGAATCTTGGAAGAGGTGGATTCCAGAACTTTTTGTTGGGGGAGAAGCTTGAACATTGAGGAGCAGATTTCAGTGACACATGTAAGTGGTGAAGGAAATGTTGATTTGGCTCCGAATGATCCTATGATTTCTGTAGTGGGTGGAAGGTTTCATGCTTGTGGAATAAAAAGCTATGATCATAGAGTTATTTGTTGGGGATTTATCATCAAACCAAGCACTTCAGTTCCTACTGAGGTTAAGGTTTATGAGATTGCAGCTGGTGATTATTTTACTTGTGGAGTACTTGCTGAGAAAAAGCCACTTAGGCCTGTTTGTTGGGGCGTCGCTTTTCCTATGTCTCTTCCTTTACCGGTTTTACCAGGACTATGCAAGCCTTCTCCATGCCCTTCTGGTTTCTATGACTTTGATCAGCAAAAGGGTCTTTGTGAGTCTCCAAATTCTGGTCTTTGCAAGCCATGCAGTGGTGATTGTCCTGTTGAAATGTATCAGAAAAGTGGATGCACTTTGGAATCTGATAGAATGTGCGAATATAACTGTTCGTCTTGTTCTTCACCCGAATGCTTCTTACACTGCTCGTCTTCTTATTCCAATACCAGAACAGAGAAGAAAAATGAGAAATTTTGGGCTTTGCAGTGGCCCGTGGTTATCGCAGAGATTGGTTTGGTTCTTTTCATATCCTGCATTGTAATTTTGATAGCGGTTTTATATGTTCACCATAGACTAAGAGATTGTGAGTGTTCAGCAAGGTTTAAAAAGTCGAAGAAACTTGATGCGAGTTCTTCCCTCCAAGATGAGAACATCAATAAGATCCGTCCGGAAATGGAGGAGTTCAAGCTTAGGAAGGCTCAGAGATTCACCTATAAAGAACTGGAAACTGCAACATGTGGATTCAAAGAGGAGTCCATAGTAGGAAAAGGAAGTTTTGCTTGTGTATTCAAAGGTGTTCTACAAGATGGAACCGTTGTAGCTGTTAAAAGGACTATAGTATCTCTATCTTTTCCTCCCAACAACACGCACAAGAATTTCAAAGAGTTTCACACTGAACTCGATTTACTCTCGAGATTAAACCATGCGCATTTGCTCAACCTTCTAGGATATTGTGAAGAAGGCGGAGAAAGACTTCTTGTCTACGAGTTTATGGCGAATGGATCTTTGTATCAACACCTACATGGAACAAACCATGTTTTGAAACAGCAACTAATCTGGATAAGAAGGGTAACGATAGCAGTTCAAGCAGCTCGCGGAATCGAATATTTGCACGGCTACGCTTGTCCACCTGTGATTCATAGAGACATTAAATCCTCAAACATACTCATTGATGAAGAACACAATGCTAGAGTAGCTGATTTTGGTTTATCATTGTTAGGTCCTGTAGACAGTAACTCTCCACTCTCCGAGCTACCGGCTGGAACTCTCGGTTACCTTGATCCCGAATACTATAGGCTTCATTACCTCACAACGAAATCCGACGTCTATAGTTTCGGCGTCCTACTCTTGGAAATTCTAAGTGGTAGAAAAGCCATTGACATGATGCAATATGAAGAAGGGAATAACATAGTTGAATGGGCAGTACCATTGATTAGATCAGGCGATATAGCTGCGATTCTGGATCCGATTCTTAAACCTCCTCATGATCTCGAAGCATTGAAAAAGATAGCTAATGTTGCTTGTAAATGTGTGAGAATGAGAGGGAAAGATAGACCTTCAATGGACAAAGTAACAACAGCTTTGGAAAGAGCTCTTGCAGTGTTAATGGGCAGTCCATGCATCGAGCAACCGATTTTGCCTTCTGAGGTTGTTTTAGGAAGTAACAGATTGCATAAGAAATCGTCTCAAATGTCATCGAATAGGTCTGAAAATGAGGATCAAAGATTTGAGCTTAGAGCACCTTCATGGATAACATTCCCTAGTGTTGCATCTTCTCAAAGAAGATCAATGTCAGAGGTAGACGGTGATGGAAAAGTTATAGAAGTGAAGAATGTAGGCAATGTTGGAGGGATCAGTGATGTGTTGAGAAGTTTAGAGGAAGAGATTGGACCTGCTTCTCCATGCCAGAGGTCGTTCTTGGAGCACAACTTCTAA 2712 0.4041 MMLLGRCFVIYVLILMLCLCRHHVYSLGSMSSIAISYGEKGSVFCGLKSDGLNSVTCYGSNSAIMYETPTRFSFHGLTGGDGFVCGLLMDSNQPYCWGNSGYIQMGVPQPMIREAQYLEISAGDYHVCGLRKVRNRNVSLVDCWGYNMTANYVFDGMIQSISAGSVFNCGLFSNNGSVFCWGDETSSKVISLIPLKMKFRMISAGGFHVCGILEEVDSRTFCWGRSLNIEEQISVTHVSGEGNVDLAPNDPMISVVGGRFHACGIKSYDHRVICWGFIIKPSTSVPTEVKVYEIAAGDYFTCGVLAEKKPLRPVCWGVAFPMSLPLPVLPGLCKPSPCPSGFYDFDQQKGLCESPNSGLCKPCSGDCPVEMYQKSGCTLESDRMCEYNCSSCSSPECFLHCSSSYSNTRTEKKNEKFWALQWPVVIAEIGLVLFISCIVILIAVLYVHHRLRDCECSARFKKSKKLDASSSLQDENINKIRPEMEEFKLRKAQRFTYKELETATCGFKEESIVGKGSFACVFKGVLQDGTVVAVKRTIVSLSFPPNNTHKNFKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMANGSLYQHLHGTNHVLKQQLIWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPVDSNSPLSELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMMQYEEGNNIVEWAVPLIRSGDIAAILDPILKPPHDLEALKKIANVACKCVRMRGKDRPSMDKVTTALERALAVLMGSPCIEQPILPSEVVLGSNRLHKKSSQMSSNRSENEDQRFELRAPSWITFPSVASSQRRSMSEVDGDGKVIEVKNVGNVGGISDVLRSLEEEIGPASPCQRSFLEHNF 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00910 903 FunFam Serine/threonine-protein kinase-like protein CR4 26 190 - -
Vifa6g00910 903 Gene3D Transferase(Phosphotransferase) domain 1 590 794 - -
Vifa6g00910 903 FunFam serine/threonine-protein kinase-like protein CCR1 477 589 - -
Vifa6g00910 903 ProSiteProfiles Protein kinase domain profile. 507 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00910 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Vifa6g00910 903 Gene3D - 23 188 IPR009091 -
Vifa6g00910 903 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 11 903 - -
Vifa6g00910 903 FunFam Receptor protein kinase CRINKLY4 590 794 - -
Vifa6g00910 903 Pfam Protein tyrosine and serine/threonine kinase 510 786 IPR001245 GO:0004672|GO:0006468
Vifa6g00910 903 SMART serkin_6 507 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00910 903 ProSitePatterns Protein kinases ATP-binding region signature. 513 535 IPR017441 GO:0005524
Vifa6g00910 903 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 337 385 IPR001368 GO:0005515
Vifa6g00910 903 SUPERFAMILY Protein kinase-like (PK-like) 487 787 IPR011009 -
Vifa6g00910 903 Gene3D - 189 327 IPR009091 -
Vifa6g00910 903 SUPERFAMILY RCC1/BLIP-II 25 277 IPR009091 -
Vifa6g00910 903 Gene3D Phosphorylase Kinase; domain 1 477 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00910 Vifa-Chr6 307247842 307250553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00910 5 903 Receptor kinase-like Gene Family AT3G59420 64.466 0.0 1130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vifa6g00910 PK_Tyr_Ser-Thr 2.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00910 - - gmx:100797455 1379