Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00903 ATGAAAATTCAGTGTGATGTCTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAACAAACTTGCTAGCAAGCATCAAAGGCTTCTCCTTCAATCTCTTTCTAATAAGCTTCCCAAATGTGATATCTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGATAGAGCACTGTTCTGTAAGGACTGTGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGCGAACCACCAGCGCTTTCTCGCGACAGTTCCTGCACAGCTAGTGCCTAGTTTTGATTCCTCTTGGGCTGTTGATGACTTACTGGAATTTACAGACTTTGACTCTTCAGACAAAAAGCAATCTATGGAATTTGGAGAGCTTGAGTGGTTATCAGACGCAGGTCTTTTCAACGAACAGTTTCCTCATGAAGGTTTAGCAGCGGCTGAAGTTCCTCAACTTCCATTAACACATGCTAGCAATGTTGCCTCATATAAAGCTCCTAAATCTTATATGTCTTACAAAAAACCTAGGATTGAAGTCCACCGTGAAGACGATGATGATGAGCATTTCACTGTGCCTGATCTTGGATAA 624 0.4151 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQSLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATVPAQLVPSFDSSWAVDDLLEFTDFDSSDKKQSMEFGELEWLSDAGLFNEQFPHEGLAAAEVPQLPLTHASNVASYKAPKSYMSYKKPRIEVHREDDDDEHFTVPDLG 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00903 207 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vifa6g00903 207 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vifa6g00903 207 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vifa6g00903 207 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 100 - -
Vifa6g00903 207 CDD Bbox1_BBX-like 5 47 - -
Vifa6g00903 207 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vifa6g00903 207 Gene3D Classic Zinc Finger 1 93 - -
Vifa6g00903 207 CDD Bbox1_BBX-like 56 98 - -
Vifa6g00903 207 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vifa6g00903 207 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00903 Vifa-Chr6 306945463 306946996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00903 1 129 Orphan Transcription Factor Family AT1G06040 57.143 1.90e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vifa6g00903 zf-B_box 8.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00903 - - gmx:100779183 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00874 1 147651901 147653048 Vifa6g00903 6 306945463 306946996 PCT