Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00895 ATGCCGCTTCCGACGAAACCAATGAGGCCACCACATGAACCCGGCCGAGACTCCGAGGAATCGTCGACTCCTTCCAATAACCTATGGGTTGGAAATCTAACGCCGGACGTTTCCGATTCCGATCTGATGAACCTTTTCGCTCAATATGGCGCACTCGATAGCGTCACCTCTTATTCCGCTCGCAGTTACGCTTTCGTCTTCTTCAAACGCGTTGAAGATGCAAAAGCCGCTAAAAACGCGCTTCAAGGCTTCCATTTTCGTGGCAATTCATTGAAAATTGAGTTTGCTAGACCGGCAAAGCCATGTAAACAGCTTTGGGTGGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTAGAAGCCGACTTCCATGATGCTATTCAGGCAATGAAAATCATGAATGGAAAACGTATTGGTGGGGAAAATATTCGTGTTGACTTCCTCCGCTCACATTCTACAAGAAAAGATCAATTTCTTGATTATGGGCAATTCCAAGGAAAAAGCTTGGGGCCTACTGATTTCTATTCTGGACAAAAAAGGCCACTGAATTCACAACCTCAAATGGGGAGGAAGGGTGATGGTCACCCTAGTAATATTTTGTGGATTGGTTATCCTCCCAATGTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTCTATTTGGTGAAATTGAGAATATCAAGAGTTTTCCTTCAAGGCATTATTCATTTGTTGAATTTAGAAGTGTCGATGAAGCCCGGCGTGCAAAAGAGGGCCTTCAAGGACGCCTTTTCAATGATCCTCGCATAGCAATCAATTATTCAAACGGTGACCAGGATAGTAGCTTGACAAATAAGATGGGTCCAAACTGGAAAAGACCATCTCCTCCTGCACCAGGGTTGCTTTCTTCCCCTGCAACGGGTGCTAGGCTTCCCGCAAGATCAGCTTCTGGTGCATGGGATGTACTTGATGTAAACAACATTTCAAGAGATTCTAAGCGGTCTAGGATAGATGGTACATTACCTAATGATGAAGCTCCATATGCTGACATTCATGGAAGGGGTATTCTTGGTCCAGGAAGCTCGAGGGTAACAGGTGGAGTACATGCTTCTGTCCAACCTGGTGATATGGATCATATATGGCGCGGACTTATTGCAAAAGGAGGATCTCCTGTTTGTCATGCTAGATGCATCCCTATAGGGAAAGGGATAGGGACGGAGCTTCCGGAAGTTGTTGATTGCTCAGCTAGGACGGGATTGGATGTACTTGCAAAACACTATGCTGATGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTTCTGCGTACACTGAATTCTTACGCTACCTTGGTGCAAAAAACCGTGCTGGTGTTGCCAAATTTGGCAATACAACTTTATTCTTGGTACCTCCTTCTGATTTCCTGACAAAAGTTTTGAAAGTCAATGGACCTGAACGTTTATATGGCGTCGTTCTCAAGTTTGCACCAGTACCAAGTGTGCCCATGCACCACTCTTCACAAATGCCTACACCATCGTCAAATCAATATACGCAGCAGTTTCCTCCTTCACAGGCTGAATATGATATGAATCCTGCAAAGGACGATCAGGTTCTGCCAATGGACTACAACAGAATGTTGCATGAAGATTCTAAGCTTCCTGCTAAGCAAGTATATCCACCTATAGGTGGGCCTTCAGTTCAATCTGCAGCTCCGGATTATGCTCCAAATACTGCTTCTGGGTCTCAAGCTGGAGTCGCATTAACACCAGAACTTATTGCGACTTTAGCTTCTTTTCTTCCAACAAATACGCAATCATCTGCTACCGATAGTGCCAAGTCGGCTGTAGGCTCCTCAACTGTAAAGCCTCCATTTCCTACTGTGGCACCTAATGATGGAAACCAATCTCAATTATTGAAACAGGATCATCAAATTGCAGATCAATCCATTCATCCACCTCAGCAGTTTAGGAATATGTATAACAGTCACAATGCTCATTTTCAGCCTTATCCGTCAGCATCAGCTCCTGGTCACACTTCTCAAGTGTTCTCTGGAAGTTCTCATACTCAAGACAGTGCTCTTATCCAGCAACTGCAAGGAGTTGTTTCATCTAGACACATGTCAAATTTTGTGACACCCACTCAAAGTGGACAGATACCTGCATCCCCCCATTTCAGTCATCAGTATCAGGCTGAGGTTCCCCCCAATTCTCAGAAAGGCTTTGGTGTGGTGCCGGGAGGTGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCATCAACCTAATAATAACCCCCAGCCCTTCCAGCAACCCAATAATTCTATTGCCTTGTCTGGTCAAGCTAGCAGTACAAATCCTCAACATCAACCTGTCATGCAATATACAGCCGACCAAATAAACTCCAATCCTCCCAGTCAGCAACATCCTGCCTTTGGAGTTAGTCAAGGCACCCCAGAATTGGAAGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAGCAAACACAAGGAGAACATGGGCCAGGAATTCAACAATGA 2574 0.4476 MPLPTKPMRPPHEPGRDSEESSTPSNNLWVGNLTPDVSDSDLMNLFAQYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGFHFRGNSLKIEFARPAKPCKQLWVGGISPAVTKEDLEADFHDAIQAMKIMNGKRIGGENIRVDFLRSHSTRKDQFLDYGQFQGKSLGPTDFYSGQKRPLNSQPQMGRKGDGHPSNILWIGYPPNVQIDEQMLHNAMILFGEIENIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRIAINYSNGDQDSSLTNKMGPNWKRPSPPAPGLLSSPATGARLPARSASGAWDVLDVNNISRDSKRSRIDGTLPNDEAPYADIHGRGILGPGSSRVTGGVHASVQPGDMDHIWRGLIAKGGSPVCHARCIPIGKGIGTELPEVVDCSARTGLDVLAKHYADAIDFEIVFFLPDSEDDFSAYTEFLRYLGAKNRAGVAKFGNTTLFLVPPSDFLTKVLKVNGPERLYGVVLKFAPVPSVPMHHSSQMPTPSSNQYTQQFPPSQAEYDMNPAKDDQVLPMDYNRMLHEDSKLPAKQVYPPIGGPSVQSAAPDYAPNTASGSQAGVALTPELIATLASFLPTNTQSSATDSAKSAVGSSTVKPPFPTVAPNDGNQSQLLKQDHQIADQSIHPPQQFRNMYNSHNAHFQPYPSASAPGHTSQVFSGSSHTQDSALIQQLQGVVSSRHMSNFVTPTQSGQIPASPHFSHQYQAEVPPNSQKGFGVVPGGDASVLYNSQAFHQPNNNPQPFQQPNNSIALSGQASSTNPQHQPVMQYTADQINSNPPSQQHPAFGVSQGTPELEADKNQRYQSTLQFAANLLLQIQQQQQTQGEHGPGIQQ 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00895 857 Pfam SPOC domain 370 487 IPR012921 -
Vifa6g00895 857 CDD SPOC_FPA-like 374 493 - -
Vifa6g00895 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 98 IPR000504 GO:0003723
Vifa6g00895 857 MobiDBLite consensus disorder prediction 1 27 - -
Vifa6g00895 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 91 IPR000504 GO:0003723
Vifa6g00895 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 262 IPR000504 GO:0003723
Vifa6g00895 857 MobiDBLite consensus disorder prediction 502 530 - -
Vifa6g00895 857 MobiDBLite consensus disorder prediction 170 194 - -
Vifa6g00895 857 FunFam Flowering time control protein FPA 18 100 - -
Vifa6g00895 857 CDD RRM_SF 28 94 - -
Vifa6g00895 857 MobiDBLite consensus disorder prediction 282 304 - -
Vifa6g00895 857 SUPERFAMILY RNA-binding domain, RBD 183 273 IPR035979 GO:0003676
Vifa6g00895 857 MobiDBLite consensus disorder prediction 756 827 - -
Vifa6g00895 857 MobiDBLite consensus disorder prediction 503 525 - -
Vifa6g00895 857 CDD RRM_SF 205 267 - -
Vifa6g00895 857 Gene3D - 11 102 IPR012677 -
Vifa6g00895 857 MobiDBLite consensus disorder prediction 604 634 - -
Vifa6g00895 857 SMART rrm1_1 27 94 IPR000504 GO:0003723
Vifa6g00895 857 SMART rrm1_1 104 146 IPR000504 GO:0003723
Vifa6g00895 857 SMART rrm1_1 199 267 IPR000504 GO:0003723
Vifa6g00895 857 MobiDBLite consensus disorder prediction 170 185 - -
Vifa6g00895 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Vifa6g00895 857 SUPERFAMILY RNA-binding domain, RBD 24 154 IPR035979 GO:0003676
Vifa6g00895 857 Gene3D - 184 280 IPR012677 -
Vifa6g00895 857 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00895 Vifa-Chr6 305772696 305780068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00895 16 133 Eukaryotic Initiation Factors Gene Family AT4G34110 24.658 3.36e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00895 - - mtr:11412967 902.508