Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00883 ATGCCAACGTTACTCCAATTCCCTCCGCCTCTATTTGTTGTCTTGTCTTGTGTTGCTTATGGTGCTGCTGTACAAGCTGCTATCTTGAGTGGTGAAGGAACACAACAATTCCAACCAAAAAAGGAACAAGTATTCTCTACTCACTCAGATAACCAACCCGGTGTCTTGATCCAAGTATTTGAGGGTGAAAGAGCAAGAACCAAAGACAACAACTTGTTGGATAAATTTGAGCTTTCTGGAATTCCTCCAGCTCCCCGTGGTGTTCCTCAAATCACGGTTTGCTTTGACATTGATGCCAACGGTATCTTGAATGTCTCAGCTGAGGACAAAACAACTGGGCAGAAGAACAAGATCACCATTACTAATGACGAAGGTAGACTTTCAAAGGAAGAGATTGAAAAGATGGTTGAGGAAGCAGAGAAATACAAGGCTGAAGATGAGGAACCACTTAAGGAGGTCCCTCCGTGTCTTCCAATTCCACGCCAACCTTCCATCTCCTCAATCACCACCACAACTCATCCATCTCCCTCACCCCACCGTGTTGCACCATTCAACTCATTAGACCAACTTAAAGCTGCATTTGCCAAACAAGGCCTTATTTTTGTGGTTGACAGCAACGACAGGGATCGTGTTGTTGAAGCTAGAGATGAGCTGCATAGGATGTTGAATGAGGATGAATTGAGAGATGCCGTGCTTCTAGTTTTTGCAAACAAGCAAGATTTTCCAAATGTTATGAATGCTGCTGAGATAACTGATAAGCTTGGTCTTCATTCTCTTCGACAGCGTCACTGGTACATCCAGAGCACATGTGCCACATCTGGTGGAGGACCTTATGAAGGACGTGACTGGCTCTCAAACAACATTGCAAACAAGGCATAG 879 0.4448 MPTLLQFPPPLFVVLSCVAYGAAVQAAILSGEGTQQFQPKKEQVFSTHSDNQPGVLIQVFEGERARTKDNNLLDKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDEGRLSKEEIEKMVEEAEKYKAEDEEPLKEVPPCLPIPRQPSISSITTTTHPSPSPHRVAPFNSLDQLKAAFAKQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDFPNVMNAAEITDKLGLHSLRQRHWYIQSTCATSGGGPYEGRDWLSNNIANKA 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00883 292 Coils Coil 125 145 - -
Vifa6g00883 292 ProSiteProfiles small GTPase Arf family profile. 35 288 - -
Vifa6g00883 292 PRINTS 70kDa heat shock protein signature 12 32 - -
Vifa6g00883 292 PRINTS 70kDa heat shock protein signature 88 104 - -
Vifa6g00883 292 Pfam ADP-ribosylation factor family 197 288 IPR006689 GO:0003924|GO:0005525
Vifa6g00883 292 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 40 148 IPR029047 -
Vifa6g00883 292 FunFam ADP-ribosylation factor 1 187 292 - -
Vifa6g00883 292 Gene3D - 180 292 IPR027417 -
Vifa6g00883 292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 290 IPR027417 -
Vifa6g00883 292 Pfam Hsp70 protein 36 149 IPR013126 GO:0005524|GO:0140662
Vifa6g00883 292 MobiDBLite consensus disorder prediction 141 162 - -
Vifa6g00883 292 PANTHER HEAT SHOCK PROTEIN 70KDA 17 208 IPR013126 GO:0005524|GO:0140662
Vifa6g00883 292 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 36 154 IPR029047 -
Vifa6g00883 292 SMART arf_sub_2 109 292 - -
Vifa6g00883 292 FunFam Heat shock 70 kDa protein 33 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00883 Vifa-Chr6 302635719 302637269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00883 17 153 Calmodulin-binding Proteins AT3G12580 72.189 1.16e-72 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00883 K03283 - pop:7458152 219.55