Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00875 ATGCCTAGCATGGCTTCCTCTCTTCTCCTTCCATTTTATTCTACTTGTGGTAAAATTCCTTCTCTTAATGCTGCTCCTCAAGGCATTTCTGTTAGAAGATTTGTTCTTAAAGTGAAGTCCTCAGAGACAAGAGAATCCACTTCTAATGCTAATGATAATGCCATGTTTAATACCAATTCACGTAGAGACTTTCTTGGATTAGCATCAGGAGGAGTTTCTACACTTTTCATCCATTCATTTGATGCTGCCAATGGAGCTGGTTTACCACCAGAAGAAAAACCTAAACTATGTGACAGCACTTGTGAGAAAGAGCTTGAAAATGTACCTATGGTAACTACTGAATCAGGTTTGCAATACAAGGATATTAAGGTTGGGCAAGGCCCTAGTCCACCAGTTGGGTTTCAGGTGGCTGCTAATTATGTTGCAATGGTTCCATCTGGACAGATATTTGATAGTTCATTGGAGAAAGGCCAGCTTTACATTTTCCGAGTTGGATCTGGTCAGGTGATAAAAGGACTCGATGAAGGTCTTTTAAGCATGAAAGTAGGCGGGAAACGTCGGCTATACATACCTGGATCATTGGCATTTCCAAAAGGGCTTAATTCTGCTCCAGGAAGACCAAGGGTGGCTCCAAATAGTCCAGTTATATTTGATGTAAGCTTGGAATATGTACCTGGACTTGAAGTGGAAGAGGAATAA 699 0.4106 MPSMASSLLLPFYSTCGKIPSLNAAPQGISVRRFVLKVKSSETRESTSNANDNAMFNTNSRRDFLGLASGGVSTLFIHSFDAANGAGLPPEEKPKLCDSTCEKELENVPMVTTESGLQYKDIKVGQGPSPPVGFQVAANYVAMVPSGQIFDSSLEKGQLYIFRVGSGQVIKGLDEGLLSMKVGGKRRLYIPGSLAFPKGLNSAPGRPRVAPNSPVIFDVSLEYVPGLEVEEE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00875 232 Gene3D - 91 224 IPR046357 GO:0003755
Vifa6g00875 232 SUPERFAMILY FKBP-like 98 221 - -
Vifa6g00875 232 FunFam Peptidylprolyl isomerase 105 223 - -
Vifa6g00875 232 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 133 225 IPR001179 GO:0003755
Vifa6g00875 232 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 133 221 IPR001179 GO:0003755
Vifa6g00875 232 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 85 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00875 Vifa-Chr6 299924020 299925370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00875 114 221 Calmodulin-binding Proteins AT3G25230 36.697 1.48e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00875 K01802 - gmx:100818743 361.688