Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00869 ATGAATCATGATCAGCAAGACAAACCATCCTTCTTTGCTCTCATCAAAGGAAATATCAACCAATTGAAAGTGCCACGAAAGATTGTTATGAATTTGGGTGAAGAGTTATGGAAAAATGAATCAATCATTCTGATAGGCTCTTCTGGTGAGAAGTGGCAAGTGAGTATTTTGAGGAAAGAAAATGACATGTATCTGCAAAACATTGGCTGGGAAAAGTTTTTGAAGGAGAATTCGATGATGAATGAAGAGTTCTTATTTTTCACATATAATGGAGAGAACAGGTTCCAGGTTGGAATTTTCAGTAGGAATGGATTAGAGAGGCCAAGCTTCAAGAAAGCAGAAGTTGCTGAAGAAGCTCCAACTGTGGTCAAGAGAAAGAGGGGTAGACCAAGCTTGAAGAAAGAAGAAAAAGTTGCCTTTGCCGCAGAAGCTCCAATTGTGGGCAAGAGAAAGAGAGGTAGACCAAGAAAAAATCCTGCTGCTGAGACAGCATGTGGCAAGAAAGAAAAAGAAAAAGAAAAAGAGGAAGCTAGAGCAACACTGGTGGCTAAGAAAGAAAAAGAAAAAGAAGCTCCAGAAACAATTGTGGCTAGGAGAAAGAATGATGAACCAAGAAAAAATCTTGCTGCTAAGAGAGTATGTGTCAAAAAAGAAAAAGAGGAAGCTGTAGAAACAATGGAGAGTAAGAAAAACAAGGGAAGACCAAGAAAAAGTGCTACTCCTTCTCCTCCTGTTGTTATTATAATAGACTGA 753 0.3865 MNHDQQDKPSFFALIKGNINQLKVPRKIVMNLGEELWKNESIILIGSSGEKWQVSILRKENDMYLQNIGWEKFLKENSMMNEEFLFFTYNGENRFQVGIFSRNGLERPSFKKAEVAEEAPTVVKRKRGRPSLKKEEKVAFAAEAPIVGKRKRGRPRKNPAAETACGKKEKEKEKEEARATLVAKKEKEKEAPETIVARRKNDEPRKNLAAKRVCVKKEKEEAVETMESKKNKGRPRKSATPSPPVVIIID 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00869 250 SUPERFAMILY DNA-binding pseudobarrel domain 5 104 IPR015300 -
Vifa6g00869 250 Gene3D - 2 104 IPR015300 -
Vifa6g00869 250 Pfam B3 DNA binding domain 18 103 IPR003340 GO:0003677
Vifa6g00869 250 Coils Coil 167 190 - -
Vifa6g00869 250 ProSiteProfiles B3 DNA-binding domain profile. 7 103 IPR003340 GO:0003677
Vifa6g00869 250 MobiDBLite consensus disorder prediction 157 234 - -
Vifa6g00869 250 CDD B3_DNA 9 101 IPR003340 GO:0003677
Vifa6g00869 250 SMART AT_hook_2 229 241 IPR017956 GO:0003677
Vifa6g00869 250 SMART AT_hook_2 149 161 IPR017956 GO:0003677
Vifa6g00869 250 SMART AT_hook_2 124 136 IPR017956 GO:0003677
Vifa6g00869 250 PRINTS AT-hook-like domain signature 147 158 IPR017956 GO:0003677
Vifa6g00869 250 PRINTS AT-hook-like domain signature 124 134 IPR017956 GO:0003677
Vifa6g00869 250 PRINTS AT-hook-like domain signature 227 237 IPR017956 GO:0003677
Vifa6g00869 250 PANTHER B3 DOMAIN-CONTAINING 2 216 - -
Vifa6g00869 250 SMART B3_2 11 103 IPR003340 GO:0003677
Vifa6g00869 250 MobiDBLite consensus disorder prediction 146 250 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00869 9 102 REM Transcription Factor Family AT3G06220 32.292 7.52e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa6g00869 B3 3.8e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00869 - - tpra:123919002 198.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00869 6 299310708 299311761 Vifa6g00869 6 299310708 299311761 ECH