Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00868 ATGCCTTGTCCTTCATTCCACAAGCTTGTTCTACCTTCCACTCTTCAAGCTAAGCAACTGAGGCTTCCAGATGATTTTGTGAGGAAATACGGGGGCGATATTTCTCCGATTGTAACTCTCATAGTTCCTGACGGAAGTGTGTGGCGTGTAGAATTGAAAAAGGAAGACAACAAATTTTGGTTCCTCAATGGCTGGCGTGAATTTGTTCAAAACTATTCCATCGGTGCTGGATACTTGTTGCTGTTCAGATACTTAGGAAAGTCGTCTTTCAATGTGAATATATTTTGTTTGGCTACTTCTGAGATTAACTATCAATCGCCCGCACAAAGCAGTAACGAAGGGTCTCTTGTTGCAAAACGTCTTAAGATTTTCGAAGAAATGGAAGACGAAGATTCCATTGAAATCCTCAGTTCGTCGCCTACAAACCTTACTCCTAGCCCGTTTCCAAACAAAGCTGTTTTTGGAGCATCTGATAAATTCACGCCTGGCAAGTCTCGTTCGCCTCCAGCTCTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGAGAAAGTGGGAATACTCCTTCTTCCAGAAGTGCTAGTTCAATAGACAGTCACTTGACCCGAGATATAGGTCTCCAGTTTAATGTAATTGAGTTTAAAAAGTCTACTGAAGAGGTGAGGTTGCGTGCGGCCACTGATGAAAAGGTTAAAAAAACTGCGACTAAGAAACGAAAATCAGATATTCAGGAACCTCCTTCCGAACACGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCGTCTGCAAGGAAAAGAACTGCTACAGCTGAAGAAAGAGAAAAGGCTATCAATGCAGCAAAAGCATTTGAACCATCTAATCCTTTCTGTCGAGTCGTCCTGCGACCCTCCTATTTATATAAGGGATGCATAATGTATCTACCATCATGCTTTGCGGAGAAGAATTTGAATGGCGTTTCAGGAATTATCAAACTTCAAATCTCAGACGGAAGACAGTGGCCGGTTCGCTGTCTTTATAAAAGCGGTAGAGCTAAGTTAAGCCAAGGATGGTTTGAATTTTCGTTAGAGAACAATTTAGGAGAAGGCGACGTGTGCGTCTTTGAGCTGGTTGACACGAAGGACGTCGTGCTGCAAGTGACTTTGTTTCGTATTACCGAGGATGATGCACTGCCGAGCCCGCCACCTTTGCAGCAGAACCAACTCGCAAGCCCTGCTAAACTGTTAATAAACAGTTCCTTTCAGAATCAGCTCGCATCAACTAAACTGATTAGAAACTAA 1296 0.4259 MPCPSFHKLVLPSTLQAKQLRLPDDFVRKYGGDISPIVTLIVPDGSVWRVELKKEDNKFWFLNGWREFVQNYSIGAGYLLLFRYLGKSSFNVNIFCLATSEINYQSPAQSSNEGSLVAKRLKIFEEMEDEDSIEILSSSPTNLTPSPFPNKAVFGASDKFTPGKSRSPPALQNLFNGSKLNSINWGESGNTPSSRSASSIDSHLTRDIGLQFNVIEFKKSTEEVRLRAATDEKVKKTATKKRKSDIQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKAFEPSNPFCRVVLRPSYLYKGCIMYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYKSGRAKLSQGWFEFSLENNLGEGDVCVFELVDTKDVVLQVTLFRITEDDALPSPPPLQQNQLASPAKLLINSSFQNQLASTKLIRN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00868 431 Gene3D - 273 393 IPR015300 -
Vifa6g00868 431 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Vifa6g00868 431 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Vifa6g00868 431 SMART B3_2 6 98 IPR003340 GO:0003677
Vifa6g00868 431 SMART B3_2 296 391 IPR003340 GO:0003677
Vifa6g00868 431 MobiDBLite consensus disorder prediction 155 175 - -
Vifa6g00868 431 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
Vifa6g00868 431 CDD B3_DNA 294 389 IPR003340 GO:0003677
Vifa6g00868 431 MobiDBLite consensus disorder prediction 230 257 - -
Vifa6g00868 431 CDD B3_DNA 4 96 IPR003340 GO:0003677
Vifa6g00868 431 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Vifa6g00868 431 Pfam B3 DNA binding domain 9 94 IPR003340 GO:0003677
Vifa6g00868 431 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Vifa6g00868 431 Gene3D - 2 97 IPR015300 -
Vifa6g00868 431 PANTHER B3 DOMAIN-CONTAINING 3 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00868 Vifa-Chr6 298820812 298823095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00868 1 392 B3 DNA Binding Superfamily AT3G18990 50.254 1.32e-124 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa6g00868 B3 2.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00868 - - gmx:100813285 618.616