Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00863 ATGCAATCAAAGATTGTTACCAACTCTTCTAATGTTTTAAATAGTTATAATAAAGTCTTAGTAACCAATCATGGTAATATTTTTTCCTATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGTGAGTTTTTAGGACATGTGTTTGAATACACAACAAAGAAAGGAGATACTTACGATTTGATTGCAAATAATTATTATGTAAGTTTGACTAGTTTTGAGCTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTCACTGTCAATTGTTCTTGTGGGAATAGCCAGATTTCAAAAGACTATGGATTGTTTGTTACTTATCCGTTAAGGTCTATGGATACTCTTGAGAAGATTGCGAACGAGTCTAAACTAGATGAAGGGTTGATACAAAATTTCAATCCTAATGTTAATTTCAGTAGAGGAAGTGGGATAATGTTCATTCTAGGAAGAGATAAAAATGGAGAATATGTTCCTTTGTATCCTAGGGTGCAGCTGTTGAAAAAGGAAGAAGAGAAAACTATACTGCCCCAAATTTCTAAGGTGCTTTCAACTCAAGATGCCTCGGGTAGTGGAGAATATGAAACTTCAGGATCTAGTGGGTATGGTACTGGTAGTGCTGCTGGGCTTACAGGAATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCTAAGGCTACAAATAACTTTAGTTTGGATAATAAAATTGGTCAAGGTGGATTCAGAGCTGTCTATTATGCCGAACTCCGAGGCGAGAAAACAGCAATTAAGAAAATGAATGTACAAGCATCAACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCATTTGAATCTGGTGAGGTTGATTGGATATTGTGTTGAGGGATCGCTTTTCCTTGTATACGAACATATTGACAACGGAAACTTGGGTCAATATTTGCATGGTTTAGGTAAAGAGCCATTACCATGGTCTAGTAGAGTCCAAATTGCTCTAGATTCTGCAAGAGGCCTTGAATACATTCATGAACACACTGTGCCAGTTTATATCCATAGCAATGTAAAATCAGCAAACATATTGGTAGACAAAAACTTGCGGGGAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTTGGAACTTTTGGATACATGCCACCAGAATTCGAAGGTGATGCAACGGAGGAGGCTGTTGGTGTTGGTGATTGTGCCGTTGATGCGAGGCGGAGGGTAATGGTTAGAGGACGACGAAGGGATGAAGGATGGAGACGGTTGACAATTGATAGTGGTGGTTGGTAA 1359 0.379 MQSKIVTNSSNVLNSYNKVLVTNHGNIFSYFRINIPFPCECIGGEFLGHVFEYTTKKGDTYDLIANNYYVSLTSFELLKKFNSYDPNHIPAKAKVNVTVNCSCGNSQISKDYGLFVTYPLRSMDTLEKIANESKLDEGLIQNFNPNVNFSRGSGIMFILGRDKNGEYVPLYPRVQLLKKEEEKTILPQISKVLSTQDASGSGEYETSGSSGYGTGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFRAVYYAELRGEKTAIKKMNVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGLGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHSNVKSANILVDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEFEGDATEEAVGVGDCAVDARRRVMVRGRRRDEGWRRLTIDSGGW 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00863 452 Gene3D Phosphorylase Kinase; domain 1 223 313 - -
Vifa6g00863 452 ProSiteProfiles LysM domain profile. 51 97 IPR018392 -
Vifa6g00863 452 Gene3D Transferase(Phosphotransferase) domain 1 314 422 - -
Vifa6g00863 452 Pfam Protein tyrosine and serine/threonine kinase 244 409 IPR001245 GO:0004672|GO:0006468
Vifa6g00863 452 SUPERFAMILY Protein kinase-like (PK-like) 225 410 IPR011009 -
Vifa6g00863 452 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 10 409 IPR044812 GO:0019199|GO:0045087
Vifa6g00863 452 Pfam LysM domain 53 91 IPR018392 -
Vifa6g00863 452 FunFam LysM receptor kinase 2 222 313 - -
Vifa6g00863 452 ProSiteProfiles Protein kinase domain profile. 243 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00863 Vifa-Chr6 298562605 298565342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00863 32 408 Receptor kinase-like Gene Family AT3G21630 55.062 9.77e-150 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa6g00863 PK_Tyr_Ser-Thr 1.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00863 - K13429 gmx:100776847 582.793