Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00862 ATGCAATCAAAGATTGTTACCAACTCTTCTAATGTTTTAAATAGTTATAATAAAGTCTTAGTAACCAATCATGGTAATATTTTTTCCTATTTTAGAATCAACATTCCATTCCCATGTGAATGTATTGGAGGTGAGTTTTTAGGACATGTGTTTGAATACACAACAAAGAAAGGAGATACTTACGATTTGATTGCAAATAATTATTATGTAAGTTTGACTAGTTTTGAGCTTTTGAAAAAGTTCAATAGTTATGATCCAAATCATATACCTGCTAAGGCTAAGGTTAATGTCACTGTCAATTGTTCTTGTGGGAATAGCCAGATTTCAAAAGACTATGGATTGTTTGTTACTTATCCGTTAAGGTCTATGGATACTCTTGAGAAGATTGCGAACGAGTCTAAACTAGATGAAGGGTTGATACAAAATTTCAATCCTAATGTTAATTTCAGTAGAGGAAGTGGGATAATGTTCATTCTAGGAAGAGGTTTTGCTAAGGGTGCAGCTGTTGGTATATGGATAGCAGGAGTATTCGGGCTTCTATTATTTGTTATTTGTATATATGTCAAATACTTCCAGAAAAAGGAAGAAGAGAAAACTATACTGCCCCAAATTTCTAAGGTGCTTTCAACTCAAGATGCCTCGGGTAGTGGAGAATATGAAACTTCAGGATCTAGTGGGTATGGTACTGGTAGTGCTGCTGGGCTTACAGGAATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCTAAGGCTACAAATAACTTTAGTTTGGATAATAAAATTGGTCAAGGTGGATTCAGAGCTGTCTATTATGCCGAACTCCGAGGCGAGAAAACAGCAATTAAGAAAATGAATGTACAAGCATCAACAGAATTTCTTTGTGAGTTGAAGGTCTTAACACATGTTCATCATTTGAATCTGGTGAGGTTGATTGGATATTGTGTTGAGGGATCGCTTTTCCTTGTATACGAACATATTGACAACGGAAACTTGGGTCAATATTTGCATGGTTTAGGTAAAGAGCCATTACCATGGTCTAGTAGAGTCCAAATTGCTCTAGATTCTGCAAGAGGCCTTGAATACATTCATGAACACACTGTGCCAGTTTATATCCATAGCAATGTAAAATCAGCAAACATATTGGTAGACAAAAACTTGCGGGGAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTTGGAACTTTTGGATACATGCCACCAGAATTCGAAGGTGATGCAACGGAGGAGGCTGTTGGTGTTGGTGATTGTGCCGTTGATGCGAGGCGGAGGGTAATGGTTAGAGGACGACGAAGGGATGAAGGATGGAGACGGTTGACAATTGATAGTGGTGGTTGGTAA 1404 0.3782 MQSKIVTNSSNVLNSYNKVLVTNHGNIFSYFRINIPFPCECIGGEFLGHVFEYTTKKGDTYDLIANNYYVSLTSFELLKKFNSYDPNHIPAKAKVNVTVNCSCGNSQISKDYGLFVTYPLRSMDTLEKIANESKLDEGLIQNFNPNVNFSRGSGIMFILGRGFAKGAAVGIWIAGVFGLLLFVICIYVKYFQKKEEEKTILPQISKVLSTQDASGSGEYETSGSSGYGTGSAAGLTGIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFRAVYYAELRGEKTAIKKMNVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGLGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHSNVKSANILVDKNLRGKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEFEGDATEEAVGVGDCAVDARRRVMVRGRRRDEGWRRLTIDSGGW 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00862 467 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 10 424 IPR044812 GO:0019199|GO:0045087
Vifa6g00862 467 FunFam LysM receptor kinase 2 237 328 - -
Vifa6g00862 467 ProSiteProfiles LysM domain profile. 51 97 IPR018392 -
Vifa6g00862 467 Pfam Protein tyrosine and serine/threonine kinase 259 424 IPR001245 GO:0004672|GO:0006468
Vifa6g00862 467 ProSiteProfiles Protein kinase domain profile. 258 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00862 467 Gene3D Transferase(Phosphotransferase) domain 1 329 437 - -
Vifa6g00862 467 Pfam LysM domain 53 91 IPR018392 -
Vifa6g00862 467 SUPERFAMILY Protein kinase-like (PK-like) 240 425 IPR011009 -
Vifa6g00862 467 Gene3D Phosphorylase Kinase; domain 1 238 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00862 Vifa-Chr6 298562605 298565342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00862 32 423 Receptor kinase-like Gene Family AT3G21630 55.283 6.61e-154 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa6g00862 PK_Tyr_Ser-Thr 1.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00862 - K13429 tpra:123921801 715.301