Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00858 ATGGACACAGAAAGATCAATAGAAGATCAATTCTCCAAGCTACATCCTTGTTTGCCACAAAACACAAGAATCGGAATAATCGGTGCCGGTCCAAGTGGCTTATCAGCTGCTTATGCATTAGCCAGACTTGGCTATAAGAATGTTACAGTTTTGGAGAAACATCACACAGTTGGTGGCATGTGTGAATCAGTAGAAATTGAAGGAAAAACTTATGATTTGGGAGGACAAGTTCTTGCTGCAAGCAGTGCTCCGGTCATCTTTCACTTGGCGAAAGAGACGGGTTCTGCATTAGAAGAAATGGATTCTCACAAGCTTGCTGTTGTTGATCCTTCCTCGGGAGAATATCAAGATATTAAAGTTGCTGATGATTATGTATCTGTTATGTCACTTACATTGGAAATACAAGAAAAAGTGAAGAATTGCAGTCGCATCGGGGTTCACGCTGTTAGCAACATTGCTTCAGACTTAACTCCAGAGTATCTAGAGTGTCATGGACTCAAATCCGTTCCTAAATCGGTAGCTTATGGTTACACTGTTTCAGGATACGGGTTTGTTCAAGACATGCCTTATGCATACCTTCATGAATTTACTCGAACATCAATGGCCGGAAAAATTCGACGATTTAGAGGTGGATATACAAGTCTTTGGAAGAAAATTGCTGAATCACTTCCTTTGAGACTTCTATGTAACACTGAAGTATTGTCAATCAAGCGGAACTCTGACAGGGTCGTGGTTCGCATCAAGAACTTAAATGTAGTTGAATCATTGGAATTCGATAAGATCATAATTTCTGGTTCGTTTCCTTTCAATTATGGAAGAATTTACAGATCGCCTTCTACTTTCATAGAATGCGAAAAAGAAGTAATGGATGCAAGTGACCTTGAAAAAGATTTATTCAGCAAAGTCGAGACAAATGATTACTACACCACTGTTTTGAAGATCAAAGGGCTAGAACATTTTCCTATTGGATTTTATTATTTTAGTAAATATATGGAAGATCCAAGCACAATTGGAAATCCAGTTGCAATGCAGAAATTTTATGATGACAGTAATATATTCTTGTTCTGGTCCTACGGAAACTCGGTTGATATTAAGGGACCAGCTGTCAAGGAGCTTGCAATGAAGACAGTAGAATCCATAGGAGGAGAAGTTGAGAGTTTCATTCTTCAACGCCGCTTTAAATACTTTCCTCATGTTAGCAGCCAAGATATGAAAGATGGATTCTATGAAAAGCTGGAATCAGAGCTTCAAGGATCAAATCATACTTATTATGTAGGTGGGCTTATGGCATTTGAGCTTACAGAAAGGAACTCATCTTATGCCATGGCTCTAATTTGCAAGAACTTTGCCAATAAAAATGATTTGCCAACATTTCCTTACACCAAGAATTTGTTTCCCTTACAAACTGAGCTACAAAAGAAGAACCCTAAAGAATTAGATGAATTGCCAGAAGTGAAATTTCTGAATTTGCCTACTTTGAATAGCTACTTAAAGTACTGGGGGACTCATCCAATCACTCAAAATAAGACTCTTTATACATGGATTAATGAAGAAGGGAATCCAGTGAGCGGCAGGACCTATGGAGAACAACATTTTTATTCTTCTTGTGTTGCTCACAAGCTCTTGACGTGCCAAAATCCAGTTATCAAGCCCGGTGACCGAGTTCTCCTCGTATATGTCCCCGGTTTAGATTTTATTGATGCCTTCTTTGGATGCCTAAGAGCTAAAGTCTTGCCAGTTCCAATTATTCCCCCGGATCCCATGCAAAGAAGTGGACAGTCACTAATGAAAATTGAAAACATTGCCAAGTCATGTGGCATTGTTGCGATTTTGTCAACAGTGGCTTATCACTCAGCCGTCCGTGCAGGTTCATTGAAAAAATTTATTTCACTAACATGGAAAAATGGGAAGTCATCCAGCTGCTGGCCAAATCTTCCGTGGTTGCATACTGATACCTGGGTCAAGAATTCTAAGAGCATCGTTTTGGAGCATCTTGATGATCAAAACGAACCACAACCTGACGATACATGTTTCTTGCAATTTACCTCGGGATCAACTGGTGATGCTAAAGGAGTCATGATCTCTCATGGAGGGCTAATTCATAATGTGAAGTTGATGCAAAGTAGATACAAAAGTACCTCAAGGACTAAACTAGTAAGTTGGCTTCCTCAGTATCATGATATGGGGCTTATTGGAGGACTTTTTACGTCTCTTGTTAGTGGTGGATCTGCGATTTTATTTTCACCAATGACATTTATCAAGAAACCAATGTTATGGCTTGAAATCATCAGCAAGTATCAAGCAACTCATAGTGCCGGACCTAACTTTGCATTCGAGTTACTGATTCGAAGATTAGAATCTGACAAGGATAAGATTCAGAATTTAGACCTTTCATCTCTGGTTTTTCTTATGGTTGCTGCTGAACCAGTGAGACAGAAGACGTTGAAAAGATTCATTGAGCTAACAACTCCTTTCGGCTTATCTCAAAAGGTAATGGCTCCTGGATACGGCTTGGCAGAAAATTGTGTGTTTGTAAGCTGTGCATTCGGAGAAGGTAAGCCTATCACTGTTGATTGGCGGGGAAGAGTTTGTTGTGGGTATGTTCGTCCAGCGGATAAAGATATCGACATTAGAATTGTTGACCCGGACACTTGCGAAGAGTTTCGCGTAGACGGGACGGAGGGAGAAATCTGGATTAGTAGTCCAAGTGCAGGAGTAGGATACTGGGGAAGGGAAGAATTGAGTCAGAAAACTTTCAGGAATGAACTTACAAATCATCCCGGACGTAAATACACAAGAACCGGAGACTTGGGACGAATAATAGATCAGAAGCTATTCATCACTGGAAGAATCAAAGATCTTATCATTGTGGCGGGAAGAAACATTTACTCGTCTGACGTGGAAAAGACAATTGAGACTTCATCTGAATTTCTTCGTCCTGGTTGCTGTGCTGTCATTGGTGTCCCTGAGGAAATTCTATCAGCAAAAGGGATTTCCATTCCAGATGGCTCTGATCAGGTTGCCTTGGTTGTGATTGCAGAAGTAAGAGATGGTAAGCCAGTTAGCAAGGATGTGATTGACAACATTAAGATGCGTGTGGCAGAAGAACACGGAGTCAGTCTTGCTTCTGTCAGGTTGATCAAGCCTAGAACCATCAGCAAAACTACATCAGGAAAGATCAAGAGATTTGAATGTATTAAACAATTTACAGATGAGACACTGCACTTGGTACCTCTACGTACAAAACCTATGATGACAAAGAAATCTAAGGTATGGCCTTTTACTACATCAACCTGCAGAGCAGAGAAACCATTCAAGCTCCAGCTTGCAAGAAGTGCACCTGCAGATAGTAAGAGGATCAATAAAAACGATATTGTAGAGTTTCTGAAAGTTCTTATTTCTGAGCAGACTGGAGTACCAATCAACAATGTCTCAGTCACAGACAACCTCACATCCTACGGAATTGACTCAATTGGTGTCGTTAAAGCAACTAAAAAACTCTCAGATTTACTTGGAACACCAGTTGCAGCTATTGATGTTTTCACTGCATCATGCATTCTTGAATTGGCTAGCTTTTCAGAGGATCTTCTGTCAAAGAATCAGCCTCAGATAGTGAGAAGTATACCTGTCCCTATTAAAAGGATCAATAAGAACGACATAACAGACTTTTTGAAAGTACTTATTTCTGAGCAGACTGGAGTACCAATCGACAACATATCAGTCACAGACAACCTGACATCCTATGGAATCGACTCAATTGGTGTGGTTAAAGCAACTCAAAAACTCTCAGATTTTCTTGGAACACCAGTTGCAGCAATAGATGTTTTCACTGCGTCCTGCATTCAAGAATTGGCTAACTTCTCTGAAGATCTTCTATCAAAGAATCAGACTCAGCTCTCAAGCAATCCATCCGATGTTCCAGAAGCGGAAATTGATTCAACTGAATCAGTTGTTGAGGTATCCAAGTCTCGCCAGTTGGGTATCCGTTTACTTCAATTCATGGCTCTTGTTTATATCTCAATCATGCTGGCCTCTCCTGCCTATCTTTCCATAACTGCTTTTTTAAATTCCAACCAATGTGCCAATAAATCAGTAGCTGGAGTTCCTTGGTTAAATTACATAATTTCGCTGGTTTTTGCACCTCTTGCATGGATTCTTTGCATTGCTTCTACTTGCATTTGCATTTCAGTGTTTGGAAGTTCTTTATTGGGGCTAAACTATGAACATACCTCTGACATCTCCATCTACTCAATGGACTTTGTCAAGTGGTGGGCACTATATAAGACTCGAGAAATTTCCTCTAAAGTTTTGGCAACACACCTCAGAGGAACAGTGTTTCTGAACTACTGGTTTGAGATGTTGGGTGCAAGAATTGGATCATCAGTTCTTCTTGATACAGTTGACATCACAGACCCGGCTCTGGTGTCAATCAGAGACGGAGCTATCGTTGCGGAAGGTGTTTTGGTTCAAAGCCATGAGGTAAAGAAAGGAGTTCTAAGTCTCCATCCCATTAGGATTGGAAACTGTTCTTCTATTGGACCTTATGCTGTTGTTCAAAAAGGAAGTGTTGTTGGAGAAAGTGTTGAAGTACAGGCTTTGCAAAAGGTTGGAGGAGGTGAAAATGAGCTAAAGCCAAATAACCTTGATATTATTGATAAGAATGCAGATCATCCTGTTATTAACAGCAAAACTCAATATGATACCATCTACCACTTTATGGGGATCTATCTTGTTGGCTTTCTCTCCTCACTTGCTGCAGCCATTGCATATTTCTTATATATCAAATTCTCCAAACATCCTCCATCACTCCAACACTTTTCATTTGTTTGTATATGTGGCGCTTTTCACTGGATCCCTTTTACTGTCATAGCATATGCTTCCATGTTCTATGATATCCCATCAAACCCCGTCACCTTTGCCGTTTCATTTACCGGCGCCTACTTTCTTCATAGTGTCATACTAATCACTCTCACTGCAATTCTCACTCGTCTCCTAATATATGACCAAAATCAAACCAAACTCAAAACCTGGCTTCAATGTCGATTAAACATTGCCTGCCACCTTAGATGTGCTAAGCTTCTCTCAGGAACAGAAGCCTTTTGTGTATATTTACGCCTTATGGGGGCAAAAATTGGCAAGTATTGCTCCATTAGAGCCATCAACCCAGTTTCAAATCCAGAGTTAATGTCAATCGGTAACGGCGTCCATCTCGGAGATTTTAGCAAAATAATTACAGGGTTTCATTCTTCCAATGGATACAATCGTGGAAAAATCGAAGTTCAAGATAACTCGGTTATTGGAAGCCAAAGCCTGATTCTCCCTGGTTCTGTCATCCAAAAGAATGTGATCCTTGGTGCACTTTCAGTAGCTCCAATGAACTCTATTCTCCAAGAGGGTGGTTTGTATATTGGTTCACAATCCCATATATCTAACTTAACTTCACCATTGCACAAACAAGACTCACCAAAAGTAACCTTCACATTGACAAGGAAATGGTATCAAACCTTGTCATCACTTTTCATTCAGCCATTTTTACAAACAGCTTTACCTCATATCTTATTAGGATTAGCAATTTATGCTCCTTTGAACTTGAATTTTTACCTAAAGAATACCAAAAAAGTTCCAATCTTTTGGCTACTTCCTTTGATATGGATTCTGTCAGGTAGTATAGCTGCATTAACATGTGTTATAGCCAAATGGGTTCTTGTAGGAAGGAAGATAAAAGGTGAAAAAGTTGCTATATGGAGTAAAGGAATAATGTTGGATACTACATGGCAAGCTATAAGAACATTAACAGGTGATTATTTCATGGAAATGACATGTGGGTCATTTATGTTTGTGAAATGGATGAAGATGATGGGTGTTGATGTAGACATGGATGATGGTGATGTTTATGTTGATAGCATGGGAGCATTGTTGAACCCTGAGATGGTTAAGATAGAGAGAGGTGGTTGTGTGGGAAAAGAGGCATTGTTGTTTGGACATATATATGAAGGTGATGAAGGAGGGATGGTGAAGTTTGGAGAGATTAAGGTTGGTGAAGATGGGTTTGTTGGGAGTAGAGCTATGGTTATGCCTGGTGTGAGATTGGAAAATGGTGCTAGTGTTGGTGCTTTGTCACTTGCTATGAAAGAAGAGTTTGTTAGGTCAAGGTGA 6156 0.3998 MDTERSIEDQFSKLHPCLPQNTRIGIIGAGPSGLSAAYALARLGYKNVTVLEKHHTVGGMCESVEIEGKTYDLGGQVLAASSAPVIFHLAKETGSALEEMDSHKLAVVDPSSGEYQDIKVADDYVSVMSLTLEIQEKVKNCSRIGVHAVSNIASDLTPEYLECHGLKSVPKSVAYGYTVSGYGFVQDMPYAYLHEFTRTSMAGKIRRFRGGYTSLWKKIAESLPLRLLCNTEVLSIKRNSDRVVVRIKNLNVVESLEFDKIIISGSFPFNYGRIYRSPSTFIECEKEVMDASDLEKDLFSKVETNDYYTTVLKIKGLEHFPIGFYYFSKYMEDPSTIGNPVAMQKFYDDSNIFLFWSYGNSVDIKGPAVKELAMKTVESIGGEVESFILQRRFKYFPHVSSQDMKDGFYEKLESELQGSNHTYYVGGLMAFELTERNSSYAMALICKNFANKNDLPTFPYTKNLFPLQTELQKKNPKELDELPEVKFLNLPTLNSYLKYWGTHPITQNKTLYTWINEEGNPVSGRTYGEQHFYSSCVAHKLLTCQNPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPIIPPDPMQRSGQSLMKIENIAKSCGIVAILSTVAYHSAVRAGSLKKFISLTWKNGKSSSCWPNLPWLHTDTWVKNSKSIVLEHLDDQNEPQPDDTCFLQFTSGSTGDAKGVMISHGGLIHNVKLMQSRYKSTSRTKLVSWLPQYHDMGLIGGLFTSLVSGGSAILFSPMTFIKKPMLWLEIISKYQATHSAGPNFAFELLIRRLESDKDKIQNLDLSSLVFLMVAAEPVRQKTLKRFIELTTPFGLSQKVMAPGYGLAENCVFVSCAFGEGKPITVDWRGRVCCGYVRPADKDIDIRIVDPDTCEEFRVDGTEGEIWISSPSAGVGYWGREELSQKTFRNELTNHPGRKYTRTGDLGRIIDQKLFITGRIKDLIIVAGRNIYSSDVEKTIETSSEFLRPGCCAVIGVPEEILSAKGISIPDGSDQVALVVIAEVRDGKPVSKDVIDNIKMRVAEEHGVSLASVRLIKPRTISKTTSGKIKRFECIKQFTDETLHLVPLRTKPMMTKKSKVWPFTTSTCRAEKPFKLQLARSAPADSKRINKNDIVEFLKVLISEQTGVPINNVSVTDNLTSYGIDSIGVVKATKKLSDLLGTPVAAIDVFTASCILELASFSEDLLSKNQPQIVRSIPVPIKRINKNDITDFLKVLISEQTGVPIDNISVTDNLTSYGIDSIGVVKATQKLSDFLGTPVAAIDVFTASCIQELANFSEDLLSKNQTQLSSNPSDVPEAEIDSTESVVEVSKSRQLGIRLLQFMALVYISIMLASPAYLSITAFLNSNQCANKSVAGVPWLNYIISLVFAPLAWILCIASTCICISVFGSSLLGLNYEHTSDISIYSMDFVKWWALYKTREISSKVLATHLRGTVFLNYWFEMLGARIGSSVLLDTVDITDPALVSIRDGAIVAEGVLVQSHEVKKGVLSLHPIRIGNCSSIGPYAVVQKGSVVGESVEVQALQKVGGGENELKPNNLDIIDKNADHPVINSKTQYDTIYHFMGIYLVGFLSSLAAAIAYFLYIKFSKHPPSLQHFSFVCICGAFHWIPFTVIAYASMFYDIPSNPVTFAVSFTGAYFLHSVILITLTAILTRLLIYDQNQTKLKTWLQCRLNIACHLRCAKLLSGTEAFCVYLRLMGAKIGKYCSIRAINPVSNPELMSIGNGVHLGDFSKIITGFHSSNGYNRGKIEVQDNSVIGSQSLILPGSVIQKNVILGALSVAPMNSILQEGGLYIGSQSHISNLTSPLHKQDSPKVTFTLTRKWYQTLSSLFIQPFLQTALPHILLGLAIYAPLNLNFYLKNTKKVPIFWLLPLIWILSGSIAALTCVIAKWVLVGRKIKGEKVAIWSKGIMLDTTWQAIRTLTGDYFMEMTCGSFMFVKWMKMMGVDVDMDDGDVYVDSMGALLNPEMVKIERGGCVGKEALLFGHIYEGDEGGMVKFGEIKVGEDGFVGSRAMVMPGVRLENGASVGALSLAMKEEFVRSR 2051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00858 2051 PRINTS Adrenodoxin reductase family signature 23 45 - -
Vifa6g00858 2051 PRINTS Adrenodoxin reductase family signature 47 60 - -
Vifa6g00858 2051 CDD FAAL 508 1071 IPR040097 GO:0008610
Vifa6g00858 2051 SUPERFAMILY Acetyl-CoA synthetase-like 497 1073 - -
Vifa6g00858 2051 SUPERFAMILY ACP-like 1216 1301 IPR036736 -
Vifa6g00858 2051 SUPERFAMILY Trimeric LpxA-like enzymes 1900 2044 IPR011004 -
Vifa6g00858 2051 ProSitePatterns Putative AMP-binding domain signature. 679 690 IPR020845 -
Vifa6g00858 2051 Gene3D Hexapeptide repeat proteins 1929 2045 - -
Vifa6g00858 2051 Gene3D - 23 445 IPR036188 -
Vifa6g00858 2051 SUPERFAMILY Trimeric LpxA-like enzymes 1706 1803 IPR011004 -
Vifa6g00858 2051 Gene3D - 1113 1195 IPR036736 -
Vifa6g00858 2051 Gene3D - 1210 1290 IPR036736 -
Vifa6g00858 2051 SUPERFAMILY FAD/NAD(P)-binding domain 20 274 IPR036188 -
Vifa6g00858 2051 Gene3D - 302 395 - -
Vifa6g00858 2051 ProSiteProfiles Carrier protein (CP) domain profile. 1123 1197 IPR009081 -
Vifa6g00858 2051 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 132 1217 - -
Vifa6g00858 2051 Gene3D - 952 1080 IPR045851 -
Vifa6g00858 2051 ProSitePatterns Phosphopantetheine attachment site. 1247 1262 IPR006162 -
Vifa6g00858 2051 ProSitePatterns Phosphopantetheine attachment site. 1152 1167 IPR006162 -
Vifa6g00858 2051 Gene3D - 480 951 IPR042099 -
Vifa6g00858 2051 SUPERFAMILY ACP-like 1121 1209 IPR036736 -
Vifa6g00858 2051 Gene3D - 94 202 - -
Vifa6g00858 2051 SUPERFAMILY Trimeric LpxA-like enzymes 1442 1538 IPR011004 -
Vifa6g00858 2051 ProSiteProfiles Carrier protein (CP) domain profile. 1218 1292 IPR009081 -
Vifa6g00858 2051 Pfam Flavin containing amine oxidoreductase 32 266 IPR002937 GO:0016491
Vifa6g00858 2051 Pfam Phosphopantetheine attachment site 1129 1191 IPR009081 -
Vifa6g00858 2051 Pfam Phosphopantetheine attachment site 1223 1287 IPR009081 -
Vifa6g00858 2051 Gene3D Hexapeptide repeat proteins 1686 1797 - -
Vifa6g00858 2051 SMART Phosphopantetheine attachment site 1221 1292 IPR020806 GO:0031177
Vifa6g00858 2051 SMART Phosphopantetheine attachment site 1126 1197 IPR020806 GO:0031177
Vifa6g00858 2051 Pfam AMP-binding enzyme 525 957 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00858 Vifa-Chr6 297700657 297707482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00858 674 990 Monolignol Biosynthesis Gene Families AT1G20480 27.358 4.19e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00858 - - tpra:123914735 3576.95