Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00856 ATGTCTGATCATGAGATCACAAAAATGGAAGAAGGTGACCTTAAGGCACCAAAACAACAAAAGGATTTAGGGTTTTTTAGTTCTCCTGAGGTTGTTCATACCATACAAAAGGTAATAGCTGAGGTGATAGGAACATACTTCTTAATATTTGCAGGGTGTTGTGTAGTGGTTCTGAATAAAGTGGGAGAGAGTAAAGGAACCATAACATTTCCCGGCATTGCTGTCACATGGGGTCTATCAGTTATGATCTTGGTTTACTCTCTCGGTCACATCTCTGGTGCTCATTTCAATCCCGCTGTCACCATTAGCTTTGCTGTCTATCGTCAGTTCCCACTCAAACAGGTGCCGATGTATATTGTTGCACAATTGCTAGGAGCTATCCTTGCTAGTGGAACATTGTGCCTTCTTTTTGACCTAGATGAAAAGTCGTTTTTCGGAACAATACCGGCTGGATCTAATGTTCAATCTCTTGTTTTCGAGATGCTAGCATCATTTTTATTGATGTTTGTTATATCCGCTGTTTCCACAGACAATAGAGCAATCGGAGAATTGGCAGGGATTGCAGTTGGTATGACAATAATAATAGACGTTTTCGTGGCCGGGCCTATCTCAGGTGCATCTATGAACCCAGCAAGAAGCATTGGACCCGCATTGGTGATGCATGTTTACAGTGGATTATGGGTTTATATAGTTGGACCCTTTGTTGGTACCTTTTTAGGTTCCTCAGCCTACAACTTGATTAGATTCACTGACAAACCACTAAATGAATTAAGTGGAAGCTCAAGCTTCCTCAATAGTTTATCAAGATAA 810 0.4099 MSDHEITKMEEGDLKAPKQQKDLGFFSSPEVVHTIQKVIAEVIGTYFLIFAGCCVVVLNKVGESKGTITFPGIAVTWGLSVMILVYSLGHISGAHFNPAVTISFAVYRQFPLKQVPMYIVAQLLGAILASGTLCLLFDLDEKSFFGTIPAGSNVQSLVFEMLASFLLMFVISAVSTDNRAIGELAGIAVGMTIIIDVFVAGPISGASMNPARSIGPALVMHVYSGLWVYIVGPFVGTFLGSSAYNLIRFTDKPLNELSGSSSFLNSLSR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00856 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Vifa6g00856 269 PANTHER AQUAPORIN NIP2-1 18 258 IPR034294 -
Vifa6g00856 269 CDD MIP 36 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa6g00856 269 SUPERFAMILY Aquaporin-like 33 256 IPR023271 -
Vifa6g00856 269 Gene3D Glycerol uptake facilitator protein. 2 257 IPR023271 -
Vifa6g00856 269 NCBIfam MIP family channel protein 40 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00856 Vifa-Chr6 296721282 296722377 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00856 1 269 Major Intrinsic Protein MIP AT5G37820 62.825 1.62e-119 343