Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00853 ATGACCTCATCATCCTCAACCTCTTGGCAAAACCTCCCTTTGAAACCAATCCCAGGAAGCTACGGTCTCCCCATCATCGGACCCATGCACGACAGACACGACTACTTCTACAACCAAGGACGCGACAAATATTTCGCGTCAAGAGTCGAGAAATACAACTCCACTGTCATCAGAGTCAACATGCCACCCGGTGGTTTCATCGCACCTGACACTAAAGTCATCGCTCTCCTCGACGGTGTTTCCTTCCCCATCCTCTTCGACAACGCCAAAGTCGAAAAACGCGACGTCCTCGACGGCACTTTCATGCCTTCCACCAACTTCTTCGGCGGTTACCGCACTTGCGCCTTTCAAGACACCGCAGAACCTTCTCATAGCCTCCTCAAACGGTTGATCTTCTTTATCTTATCCTCAAAACACAACACCTTTATTCCTCTCTTCATCACCAACCTCTCTGAACACTTCACGGATCTCGAGAAAGATGTTTCCAAACACGGCAAAGCAAACTTCAACTCCTCCATCGGAACCGCCACCTTCAACTTCCTCTTCAAATTCATCACTGATAAAAACCCAACCGAAACAAAAATCGGCGACTCCGGCCCAACTCTTGTCCAAGTCTGGCTTGCAGCTCAGCTTGCCCCATTAGCCACAGCTGGTCTTCCTAAGATATTCAACTACATCGAAGATGCTCTCATCAGAACCATACCGATCCCGTCCTGGACAGTGAAATCTAGCTACGACAAGCTTTACGAAGGTTTATGGGAAGCAGGAACTTCTGTCTTAAACGAAGCTGAAAAAATGGGAATCAAAAGAGACGAAGCATGTCACAACCTTGTTTTCACTCTAGGTTTCAACGCTTTTGGAGGTTTAACAAACCAGTTTCCGATTCTGTTAAAATGGGTCGGGTTAGGTGGTGAGAGTTTACACAAAAAACTTTCCGACGAAATCAGAACCGTCGTTAAGGAAGAAAACGGTGTCAGTTTCAGTGCCTTGGATAAGTTGACTTTGACTAAATCAGTGGTCTACGAAACGTTGAGAATTGAACCTGCTGTACCGTATCAATACGCGAAAGCGAGGGAGGATCTGGTGGTGCAGAGTCACGATGCGTCTTTTGAGATCAAGAAAGGTGAGATGATATTTGGATATCAACCGTTCGCTACTAAGGATGCTAAGATTTTCGAGAATCCTGAGGATTTTGTTGCGGATAGGTTTGTGGGAGATGGAGAGAAGATGTTGAAGCACGTGTTCTGGTCCAATGGACGTGAGACTGATGAGGCTACACCTGATAATAAAATGTGTCCGGCTAAGGATCTGGTGGTGCTCTTGTGTAGGTTGTATTTGGTGGAATTCTTCTTGCGTTATGATACTTTTACGTTTGAATTTAAACCGTCGGTTTTGGGTCCAAGTATTACTATCAAGTCGCTCGTTAAGGTTTCCTCCACCGTCTGA 1446 0.4606 MTSSSSTSWQNLPLKPIPGSYGLPIIGPMHDRHDYFYNQGRDKYFASRVEKYNSTVIRVNMPPGGFIAPDTKVIALLDGVSFPILFDNAKVEKRDVLDGTFMPSTNFFGGYRTCAFQDTAEPSHSLLKRLIFFILSSKHNTFIPLFITNLSEHFTDLEKDVSKHGKANFNSSIGTATFNFLFKFITDKNPTETKIGDSGPTLVQVWLAAQLAPLATAGLPKIFNYIEDALIRTIPIPSWTVKSSYDKLYEGLWEAGTSVLNEAEKMGIKRDEACHNLVFTLGFNAFGGLTNQFPILLKWVGLGGESLHKKLSDEIRTVVKEENGVSFSALDKLTLTKSVVYETLRIEPAVPYQYAKAREDLVVQSHDASFEIKKGEMIFGYQPFATKDAKIFENPEDFVADRFVGDGEKMLKHVFWSNGRETDEATPDNKMCPAKDLVVLLCRLYLVEFFLRYDTFTFEFKPSVLGPSITIKSLVKVSSTV 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00853 481 FunFam Allene oxide synthase, chloroplastic 12 479 - -
Vifa6g00853 481 SUPERFAMILY Cytochrome P450 12 456 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g00853 481 Pfam Cytochrome P450 308 406 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g00853 481 PRINTS E-class P450 group IV signature 333 349 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g00853 481 PRINTS E-class P450 group IV signature 370 384 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g00853 481 PRINTS E-class P450 group IV signature 386 404 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g00853 481 CDD CYP74 47 472 - -
Vifa6g00853 481 Gene3D Cytochrome P450 8 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa6g00853 481 PANTHER CYTOCHROME P450 26 11 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00853 Vifa-Chr6 296037401 296038846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00853 1 478 Cytochrome P450 AT5G42650 49.792 3.96e-166 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00853 K01723 - gmx:100810890 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00853 6 296037401 296038846 Vifa6g00853 6 296037401 296038846 ECH