Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00849 ATGGGGAGTTGCGTATCAACACATGGCAAAGGCATCCGAAAGAGATCAAGAGATCCTCACCACAGCAACAATAACAAACACAACAAAACCGCACCTGATCAAGACCACGAGCCCACAACCCCGCCCGCGCCGCGTAGGTCTAGCGTGACATCGCGTCCACTAAACGTCGTAACAAATCCAAGTCCAGGCAGCATATTTGATAAATATGACTTAGGAAAAGAGCTTGGAAGAGGAGAGTTCGGCGTGACTGTGCGTTGCGTGGACCTAGAAACGGGCGAGGCGTTTGCGTGTAAGAAGATAGCAAAGACGAAGCTCAGGACGGAGATTGATATTCAGGATGTGAGGAGGGAGGTTCAGATCATGAAGCATTTGCCCCAACATCCTAATATTGTTGCTTTTAGAGAGGCTTATGAAGATAAAGATGCTGTTTATCTAGTTATGGAATTGTGTGAAGGTGGTGAACTTTTCGATAGGATTGTTGCTAAAGGTCATTATACAGAAAGAGCGGCCGCCAATGTTGCCAAAACCATTCTTGAAGTTTGCAAGGTGTGTCATGAACATGGTGTGATACATAGGGACTTAAAGCCTGAAAATTTCTTATTTTCAGATGCAAGTGAGACAGCTTCACTTAAGGCAATTGATTTTGGTCTTTCCACTTTTTATGTAACTGGCGATAGATTCAATGAAATTGTTGGAAGTCCTTATTATATGGCTCCGGAAGTTTTGAGACGTAACTATGGACAAGAAATCGATATTTGGAGCACGGGCGTTATTCTTTATATTTTGCTTTGTGGTGTTCCACCCTTTTGGGCAGAAACTGAAGAAGCCATAGCGCAGGCGATTATCCGGGGTAATGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGAAGAAGCAAAATACCTTGTTAGGCGTATGCTTGATCCAAATCCATACACTAGAATCACAGTTCAAGAAGTTCTTGATCATACCTGGATACAACATAGGGAGCATGGTAGAAATGTTTCTCTTGGAGACCATGTGAGAATGAGGATCAAGCAATTCTCGTTGATGAATAGATTCAAGAAGAAAGTCCTTAGAGTGGTGGCTGATAACTTACCAGATGAACAAATTGATGGACTTAGAAAACTGTTTGATATGATGGATAAGGACTGCGATGGCGTCTTAACTTTTGATGAGCTGAAAGACGGCTTTACAATGATTGGACAAGTTATTCCTGATCCTGATATTCAAACATTAATAGATGCTGCAGATTCTGATGGAAACGGCAACTTGAATTGCGAAGAGTTCATCACAATGAGTGTTCATTTGAGAAGAATTGGAAATGATGAGCATCTCACCGAAGCATTCAATTTCTTTGACAAGAATAAGAGCGGATATGTTGAGTTTGACGAGTTAAAAGACGCCTTATCAGATGATGATTCAACCGACGACCAGGTGGTCAGAGACATTCTAAATGATGTTGATTTGGATAAGGATGGTCGAATAAGTTTTGAGGAGTTTAGGGCAATGATGACGACAGGAGGAGATTGGAAAATGGCATCTCGACAGTATTCAAGAGCAATGCTAAATGCATTAAGTTTCAGAATGTTTAAAGACAAATCTGTGGGAGTAGTAACTAACTAA 1629 0.4144 MGSCVSTHGKGIRKRSRDPHHSNNNKHNKTAPDQDHEPTTPPAPRRSSVTSRPLNVVTNPSPGSIFDKYDLGKELGRGEFGVTVRCVDLETGEAFACKKIAKTKLRTEIDIQDVRREVQIMKHLPQHPNIVAFREAYEDKDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFSDASETASLKAIDFGLSTFYVTGDRFNEIVGSPYYMAPEVLRRNYGQEIDIWSTGVILYILLCGVPPFWAETEEAIAQAIIRGNVDFTRDPWPKVSEEAKYLVRRMLDPNPYTRITVQEVLDHTWIQHREHGRNVSLGDHVRMRIKQFSLMNRFKKKVLRVVADNLPDEQIDGLRKLFDMMDKDCDGVLTFDELKDGFTMIGQVIPDPDIQTLIDAADSDGNGNLNCEEFITMSVHLRRIGNDEHLTEAFNFFDKNKSGYVEFDELKDALSDDDSTDDQVVRDILNDVDLDKDGRISFEEFRAMMTTGGDWKMASRQYSRAMLNALSFRMFKDKSVGVVTN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00849 542 ProSiteProfiles EF-hand calcium-binding domain profile. 442 476 IPR002048 GO:0005509
Vifa6g00849 542 ProSitePatterns EF-hand calcium-binding domain. 383 395 IPR018247 -
Vifa6g00849 542 FunFam Calcium-dependent protein kinase 7 336 510 - -
Vifa6g00849 542 Pfam EF-hand domain pair 445 506 IPR002048 GO:0005509
Vifa6g00849 542 MobiDBLite consensus disorder prediction 41 59 - -
Vifa6g00849 542 CDD STKc_CAMK 68 326 - -
Vifa6g00849 542 CDD EFh 375 434 IPR002048 GO:0005509
Vifa6g00849 542 FunFam calcium-dependent protein kinase 13 155 335 - -
Vifa6g00849 542 Gene3D - 336 508 - -
Vifa6g00849 542 CDD EFh 446 507 IPR002048 GO:0005509
Vifa6g00849 542 Gene3D Phosphorylase Kinase; domain 1 71 154 - -
Vifa6g00849 542 Pfam Protein kinase domain 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00849 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vifa6g00849 542 ProSiteProfiles EF-hand calcium-binding domain profile. 370 405 IPR002048 GO:0005509
Vifa6g00849 542 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Vifa6g00849 542 SMART serkin_6 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00849 542 ProSitePatterns EF-hand calcium-binding domain. 419 431 IPR018247 -
Vifa6g00849 542 MobiDBLite consensus disorder prediction 1 59 - -
Vifa6g00849 542 SMART efh_1 374 402 IPR002048 GO:0005509
Vifa6g00849 542 SMART efh_1 410 438 IPR002048 GO:0005509
Vifa6g00849 542 SMART efh_1 446 474 IPR002048 GO:0005509
Vifa6g00849 542 SMART efh_1 481 509 IPR002048 GO:0005509
Vifa6g00849 542 FunFam Calcium-dependent protein kinase 1 71 154 - -
Vifa6g00849 542 Gene3D Transferase(Phosphotransferase) domain 1 155 335 - -
Vifa6g00849 542 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Vifa6g00849 542 SUPERFAMILY Protein kinase-like (PK-like) 48 332 IPR011009 -
Vifa6g00849 542 SUPERFAMILY EF-hand 366 506 IPR011992 -
Vifa6g00849 542 ProSiteProfiles Protein kinase domain profile. 69 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00849 542 ProSiteProfiles EF-hand calcium-binding domain profile. 406 441 IPR002048 GO:0005509
Vifa6g00849 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 499 - -
Vifa6g00849 542 Pfam EF-hand domain pair 387 437 IPR002048 GO:0005509
Vifa6g00849 542 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00849 Vifa-Chr6 294091259 294093733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00849 1 534 EF-hand Containing Proteins AT2G31500 66.296 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vifa6g00849 Pkinase 1.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00849 K13412 - gmx:100818929 855.514