Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00847 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATAATACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTCATTCACATTGTTGCCATCATTTCAGGAAACAACATCAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGAGAGTAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCAATCCCGAGACGTGGCATTGGCAACAGCAGCAAAAGCAAAATTACTTCTTCGTGAGCTAAAAACCGTTAAAGCGGATTTAGCATTTGCTAAAGCGCGTTGTGCTCAACTTGAAGAAGAAAATAAATTACTCAGGGAACGAGAAGGAAGCGATAAGGGACTTATCCGTGATGATGATGATCTGGTAGCTTCAAGATTAAAGGTGAGTTCCCACTTTACTGCGTGGCTTGGGTTTAAACTGGTCTGTCATTTGAGTTCTATGAAATATGCAATGCAGCAAGCTTTAAACACCATGATGGGCCAGATGAATACACAAAATAATAATCCATTTGACAGTGGTGCATTTTCCCCTGGATCTCCCTTCCCCTTTCCCATGCCTTCAGCTTCAGGGCCCACTACACCTGCTGGCTTTGCTGGTAATCAATCTCAAGCAACTTCTGCAAGAACTGCCTCTCAATCTACTGTCACAGTAGACATACCTTCAACCAAAGTAGAAGCAGCAGCCTCGGCCCCAGACATTAATGTTAAAGAAGAAGTGGAAGTAAAGAATGAACCAAAAAAATCCGCTTTTGTAGATGTGTCTCTAGTTAAACTTTATGAGTATTATTTTAAAGATTATTATTTTAATACATTTTTTTAG 1206 0.4013 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDNTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIHIVAIISGNNISEKAYEDGRTMVESKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKQSRDVALATAAKAKLLLRELKTVKADLAFAKARCAQLEEENKLLREREGSDKGLIRDDDDLVASRLKVSSHFTAWLGFKLVCHLSSMKYAMQQALNTMMGQMNTQNNNPFDSGAFSPGSPFPFPMPSASGPTTPAGFAGNQSQATSARTASQSTVTVDIPSTKVEAAASAPDINVKEEVEVKNEPKKSAFVDVSLVKLYEYYFKDYYFNTFF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00847 401 MobiDBLite consensus disorder prediction 310 343 - -
Vifa6g00847 401 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 7 128 IPR033275 -
Vifa6g00847 401 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa6g00847 401 SUPERFAMILY RING/U-box 13 66 - -
Vifa6g00847 401 Coils Coil 202 236 - -
Vifa6g00847 401 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa6g00847 401 MobiDBLite consensus disorder prediction 159 191 - -
Vifa6g00847 401 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa6g00847 401 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa6g00847 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vifa6g00847 401 Pfam Protein of unknown function (DUF3675) 67 128 IPR022143 -
Vifa6g00847 401 MobiDBLite consensus disorder prediction 149 191 - -
Vifa6g00847 401 MobiDBLite consensus disorder prediction 322 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00847 Vifa-Chr6 293739205 293742994 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00847 16 62 C3H Transcription Factor Family AT2G37950 48.000 3.31e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00847 - - lja:Lj1g3v3244520.2 189.119