Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00844 ATGTATCCCAAACGTTCTAGCCAGGATGATCCTGTTTCCGGGCCAGTACGCACAAGTGATAGGATTAAAACAAGGCCACCGGGCTATAACCGCGCACCATTCTTGTATTACAACTCAAATCTTAGACGCCCTAGGAAAAGCAAGAATAAGACGAGAACAGCTGCTTCACAGATTGCTAAGATGCTGCGTCCAGGGAATCGGAAGGCACACGAGTCAAATGCTAATAATTCTGGCTCTGCCAACCTTCGGCGCTCAACCAGGGAGAGAAGGGTTAATGTAAATCTTATTCAGTTTGCAGACAGCTCTGGTTCCGAGGATGCAGACTTAATGAGACATACATATCGACCATTAAGAAACCGGATTGGCAACAGCGTCAGCCGAGATGATGTAGTATCTTCTAAGCGCAAACGTGCAGTGGATACTAAACCAGCACCTCGACGGGAAGGTCTAAGGCCTCGTCGATCGAAGGCTGCTGGTAGAGAAAGATTAATTTCAGAATCAGATAATGGTCAAGACCTTTCAGAGGAGAAGGTTGAACAAGATGAAACAGAAAATGGAGATGATGTTGAGGAAAATGATGCAGAAGATGGTCATGAGAGGGAGGGTGAAGATGAGGGTGAAGATGAAGGCGAGGATGAAGGCGAGGATGAAGGCGAGGATGATGGTGATGATGAAGATGGTGAAGAAGAGCGGGATGGAAGAAGGCGCTACGATCTTCGAAATCGTGCAGATGTCCGCAGGTTCTCTATGGAGGAAGGGAAGACGCGACCAAGGTCACCTCGAAGAGTGTTACAACAAGGTATGGGAACTAAGGTCAGCAGGGATGTAAGGAAGGGTGGATCACGTGTTCACAAGCGCCACCGTTTAACAAGGCCTGAAGATTCGGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCTATTCCGTGGGGTCGAGGTGGCGGCAGATCTGGCCCACCTTTTCTTTTGGGGGGCCTAGACACGCATGGAACAACAGCTTGGGGATTAAACATTGCTGCATCGGGTTGGGGTCATCAGGGTGATGCTTTTGCTACTCTAACTTCAGGAATTCAAACTGCTGGTCCAAGCTCCAAGGGAGGGGCAGATATCCAACCCTTGCAGGTTGATGATAGTGTGAGTTTTGAAGATATAGGTGGGCTCTCTGAATACATTGATGCTCTGAAGGAAATGGTTTTCTTTCCATTGTTGTATCCAGATTTTTTTGCAAGTTACCATATAACTCCACCTAGGGGGGTCTTGTTATGTGGCCCCCCTGGCACGGGAAAAACATTGATTGCAAGAGCTTTGGCTTGCTCTGCTTCAAAAGCTGGTCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGACGTGCTAAGCAAGTGGGTAGGTGAGGCTGAAAGACAGCTGAAACTTCTTTTTGAGGAGGCACAAAGGAATCAACCATCTATCATCTTCTTTGATGAAATTGATGGACTTGCACCTGTGAGATCTAGCAAGCAAGAACAAATTCACAATTCCATTGTGTCTACTTTGCTTGCTTTGATGGATGGTCTTGATTCTCGGGGACAAGTTGTTTTAATTGGTGCTACCAACAGGATTGATGCTATTGACGGAGCCTTGCGACGTCCTGGCAGATTTGATCGAGAATTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCCGAAATATTAAATATTCATACTCGTAAGTGGAAACATCCTCCTCCTGAGGAACTGAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTACTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCTGCCATTCGTGCTTTCCGTGTAAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTCATTGATGTTGATTCTATTAGAGTAGAAAAGTGTCATTTTATTGAAGCAATGTCTACAATTACTCCTGCCGCTCATAGAGGAGCTACTGTGCACTCTAGGCCTTTGTCACTAGTAGTTCAACCATGTCTTCAGAGATACCTGGAGAAAGCCATGAGTACTATATCTGATATTTTCCCTCCAGTATCTGTTGCATCGGAATTAACCAAACTTTCCATGCTTTCGTACGGGTCTGCAATTCCACTTGTATATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGCACAGGGCTGGATCATCTTGGGCCTGCGGTTTTACATGAACTGGAAAAATTCCCTGTGCATTCATTAGGACTTCCATCTCTTCTGTCAGATCCCAGTGCAAAGACGCCGGAGGAGGCGCTGGTACATATATTTGGTGAAGCTAGAAGAACGACACCATCAATTCTCTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCCGTTCTCCTGACTATGCTAGAAGAATTGCCATCTGACTTGCCTATCTTACTTCTTGGTACATCCTCAGTTGCACTTGCTGATGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCTCAGTTTATCAAGTGAACATGCCATCTACCGAAGACAGGACCTTGTTTTTTACTCGTTTAATAGAAGCTGCTATGTCGATATTGTTGGAGCGAATCAGCAACAAATCCCAGGATTCAGGACGCCGTTCTGAACTTCCCAAGGCCCCAAAATTGGCAAGTGGCCCAAAGGCATCTGAGCTAAAAGCAAAGGTTGAAGCTGAGCAGCATGCACTTCGAAGATTGCGAATGTGCCTTAGAGATGTTTGCAACCGGATGTTGTATGACAAACGGTTTAATGCCTTCCATTTTCCCGTCTCAGATGAAGATGCGCCTAATTATCGCTCAATTATACAGAACCCAATGGACATTGCTACCATCTTGCAGCATGTTGATAACCGCCACTATATTACATGTGCGGCATTCTTGCAGGACATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGATGACTACAATGGCACTAGGATTGTCAGCAGAGCTTGTGAGCTTCGTGATACGGTGCATGGGATGCTCTCTCAAATGGATCCAGCACTGGTTGCATTTTGTGAAAAGATTGCTAGCCAAGGTGGCCCAGTTCATTTCCCTGAGGAATTAGGGGATTCTACATTCCCTGCTACTCCTGTTGTACAGCTGGGTACCACTACTAGAACGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACATGGATCAGGGTTACGAAGTATTGAAGCGGACTAAGAAGATCGGTGAAGCTGTACATGCAGCAGAAAGCAAATCACAAGATTCAATACCAGTAAAGTCCTCCCAGGAGCAGCATCAGGCACATGACAAGGATTCTGAAAGAATGGAACCTGAAGCAATTGATGGAGATTTGCTTGGGTCTTGTACAAATAACCCCACTGCTGATGGTAGCAGCAGCCTTCATGATATCACAATGCATGATGTAACATTGCCAGACGGTGAATTTTCAAAACAGGTTGAGTCTGTTAAGCAGCATTTTGTCAAGCGCAGTGAAAAATACAGCATCCCACAACTTGAAAGGCTTTACACAAGAATCATGAAGGGTGTGTTTGAAACCAAAGATAAAGGAATGAATGCTGATGACCTCAAGAATTCGGTTTTGGGGTTTTTGTTGAAATTTGTAGAGGATGATGCAAATTTCTGA 3645 0.4538 MYPKRSSQDDPVSGPVRTSDRIKTRPPGYNRAPFLYYNSNLRRPRKSKNKTRTAASQIAKMLRPGNRKAHESNANNSGSANLRRSTRERRVNVNLIQFADSSGSEDADLMRHTYRPLRNRIGNSVSRDDVVSSKRKRAVDTKPAPRREGLRPRRSKAAGRERLISESDNGQDLSEEKVEQDETENGDDVEENDAEDGHEREGEDEGEDEGEDEGEDEGEDDGDDEDGEEERDGRRRYDLRNRADVRRFSMEEGKTRPRSPRRVLQQGMGTKVSRDVRKGGSRVHKRHRLTRPEDSDDSLLVDELDQGPAIPWGRGGGRSGPPFLLGGLDTHGTTAWGLNIAASGWGHQGDAFATLTSGIQTAGPSSKGGADIQPLQVDDSVSFEDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACSASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILNIHTRKWKHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFRVKYPQVYTSDDKFLIDVDSIRVEKCHFIEAMSTITPAAHRGATVHSRPLSLVVQPCLQRYLEKAMSTISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTMLEELPSDLPILLLGTSSVALADVEEVPTSVFPHRSVYQVNMPSTEDRTLFFTRLIEAAMSILLERISNKSQDSGRRSELPKAPKLASGPKASELKAKVEAEQHALRRLRMCLRDVCNRMLYDKRFNAFHFPVSDEDAPNYRSIIQNPMDIATILQHVDNRHYITCAAFLQDIDLIVSNAKAYNGDDYNGTRIVSRACELRDTVHGMLSQMDPALVAFCEKIASQGGPVHFPEELGDSTFPATPVVQLGTTTRTSARLRHVQPEVNMDQGYEVLKRTKKIGEAVHAAESKSQDSIPVKSSQEQHQAHDKDSERMEPEAIDGDLLGSCTNNPTADGSSSLHDITMHDVTLPDGEFSKQVESVKQHFVKRSEKYSIPQLERLYTRIMKGVFETKDKGMNADDLKNSVLGFLLKFVEDDANF 1214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00844 1214 FunFam ATPase family AAA domain-containing protein 2B 557 642 - -
Vifa6g00844 1214 Pfam ATPase family associated with various cellular activities (AAA) 421 556 IPR003959 GO:0005524|GO:0016887
Vifa6g00844 1214 ProSitePatterns AAA-protein family signature. 526 544 IPR003960 GO:0005524|GO:0016887
Vifa6g00844 1214 Gene3D - 557 642 - -
Vifa6g00844 1214 FunFam ATPase family, AAA domain-containing 2 379 562 - -
Vifa6g00844 1214 ProSiteProfiles Bromodomain profile. 924 986 IPR001487 GO:0005515
Vifa6g00844 1214 PANTHER AAA DOMAIN-CONTAINING 1083 1201 IPR045199 -
Vifa6g00844 1214 Gene3D - 679 849 IPR027417 -
Vifa6g00844 1214 MobiDBLite consensus disorder prediction 1 88 - -
Vifa6g00844 1214 Gene3D - 379 649 IPR027417 -
Vifa6g00844 1214 SMART AAA_5 417 558 IPR003593 GO:0016887
Vifa6g00844 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 921 IPR027417 -
Vifa6g00844 1214 CDD Bromo_AAA 901 1011 - -
Vifa6g00844 1214 FunFam ATPase family AAA domain-containing protein 893 1021 - -
Vifa6g00844 1214 MobiDBLite consensus disorder prediction 129 176 - -
Vifa6g00844 1214 MobiDBLite consensus disorder prediction 229 259 - -
Vifa6g00844 1214 SUPERFAMILY Bromodomain 897 1011 IPR036427 GO:0005515
Vifa6g00844 1214 SMART bromo_6 901 1008 IPR001487 GO:0005515
Vifa6g00844 1214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 380 642 IPR027417 -
Vifa6g00844 1214 MobiDBLite consensus disorder prediction 177 228 - -
Vifa6g00844 1214 PRINTS Bromodomain signature 949 967 IPR001487 GO:0005515
Vifa6g00844 1214 PRINTS Bromodomain signature 933 949 IPR001487 GO:0005515
Vifa6g00844 1214 PRINTS Bromodomain signature 967 986 IPR001487 GO:0005515
Vifa6g00844 1214 MobiDBLite consensus disorder prediction 1078 1110 - -
Vifa6g00844 1214 MobiDBLite consensus disorder prediction 125 301 - -
Vifa6g00844 1214 Pfam Bromodomain 914 982 IPR001487 GO:0005515
Vifa6g00844 1214 Pfam AAA+ lid domain 583 618 IPR041569 -
Vifa6g00844 1214 MobiDBLite consensus disorder prediction 868 890 - -
Vifa6g00844 1214 Gene3D - 893 1021 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00844 Vifa-Chr6 293614942 293622896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00844 367 621 Calmodulin-binding Proteins AT3G56690 36.293 1.16e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00844 K22531 - gmx:100787765 1922.52