Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00842 ATGTCGAAAACCACCGCATCCGCCGCCGACTTCGACACGCCGACACTAGACACGGAGTCTTCCACACTCCTCCACTCCATTTACGAACACGGAGGATACGCCTACGTGAGGATGGCCTCACAAGCTGCCGCCGGCGACGTCCGCGCGGCGGAGGCGGTTAGGGAGATGGCGTGGGAGCAACTTCACTCGGGACCGTGGCACTCTGTGTTGCCGGTGTGGCGTGACGCGTACTCGATGGCGTGTCTTCACGTGGCGAAGCACCACTACGGAAACGGCGAATTTAAGGAGGCGCTTAGGGCTTTGGATATGGGGATCATCATGGGAGGGAGTCTGCTTAGAAAGGATTTGGACTCTGCTATTGGTAAGGTTTCTGAAAAGGCTAGGATCCTTAGGGTTTCTGATAGCGACGATCATCGACTCGTTGATCTAGATTTTGATGTGTCTAAGGTGCTCCAACTTTTACCTTTGAAGTCCCTTGCTTCGAAGCTTGTGGTGAAGAGGTCTGCCCTGTCGCTGGAGAATTTCCTGAAAGATCATTACCTGTCTGGCACCCCAGTTATCATTAGTGATTGCATGGCGCACTGGCCAGCCAAGAAAAACTGGAATAATAAAGAGTACTTGCTAAGAGTTGCTGGTGATCGCACTGTTCCGGTTGAGGTTGGGAAAAACTATTTATGCTCAGATTGGAAGCAAGAACTAGTTACATTTTCAGAGTTTCTTGAGCGGATAAGCTCCCATGGCTGTTCTCCCAGTGGTCCTACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTTCGGAAAGATATCTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTAAGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTAACACCATTACACCATGATCCACATCATAACATACTTGCACAGGTTGTTGGGAAAAAATACATTAGGCTTTATCCAGCATCTTTATCTGAGGAGCTTTTCCCTTACTCAGAAACCATGCTTAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAATGAAGTTTCCTAAGGTGCAAGACTTGGAATTCGTAGACTGTATTTTAGAGGAAGGTGAAATGTTATACATCCCGCCAAAGTGGTGGCACTATGTGCGGTCTTTAACTACCAGTCTGTCAGTTAGCTTTTGGTGGAGTGAGGGTGAAAGTTCATCGCCATCCTAA 1218 0.4787 MSKTTASAADFDTPTLDTESSTLLHSIYEHGGYAYVRMASQAAAGDVRAAEAVREMAWEQLHSGPWHSVLPVWRDAYSMACLHVAKHHYGNGEFKEALRALDMGIIMGGSLLRKDLDSAIGKVSEKARILRVSDSDDHRLVDLDFDVSKVLQLLPLKSLASKLVVKRSALSLENFLKDHYLSGTPVIISDCMAHWPAKKNWNNKEYLLRVAGDRTVPVEVGKNYLCSDWKQELVTFSEFLERISSHGCSPSGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYPASLSEELFPYSETMLSNSSQVDLDDVDEMKFPKVQDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSLSVSFWWSEGESSSPS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00842 405 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 75 401 - -
Vifa6g00842 405 ProSiteProfiles JmjC domain profile. 263 405 IPR003347 -
Vifa6g00842 405 SMART cupin_9 254 402 IPR003347 -
Vifa6g00842 405 FunFam lysine-specific demethylase JMJ30 163 396 - -
Vifa6g00842 405 Gene3D Cupin 163 397 - -
Vifa6g00842 405 Pfam Cupin-like domain 174 398 IPR041667 -
Vifa6g00842 405 SUPERFAMILY Clavaminate synthase-like 168 397 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00842 158 396 Acyl Lipid Metabolism Gene Families AT3G45880 25.000 1.27e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa6g00842 Cupin_8 6.9e-48 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00842 K24444 - gmx:100813075 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00842 6 288299570 288303027 Vifa6g00842 6 288299570 288303027 ECH