Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00838 ATGCTATTTTATACTATTATCTTCTCTCTTGAACCTTCCTACTCAGTACTCAGGTTTCTTCTTTTCTTCATCACCACCACTCTCACCTCTACACGCGACATAGAAATTTTTTCATTCGGTGCTCAGAGACAGACAAACAGGTGTTTAAAGAAGAACAAGAAAAAAATGGAGTCAGATCTTCAGCAGCATCCCACTATGTTTCTAGATCATCAAAATCATCACCAGCAGCAACAAATGAATACAGGGTTAACACGGTTTAAATCTGCACCAAGTTCATATTTTTCGAATATAATTGATAAAGAGTTCTATGAGCATCTTTTTAACCGACCTTCAAGTCCTGAAACAGAACGTGTTTTTGCTCGGTTTATGAATAGTCTTAGTGGTAGTGGTAGTGGTAGTGGTGGTGGCGGTGGTGATGCTGAAAGTGCTTCTGCTACAGCTACAGCTACACCTTCTGTTGCTGTATCTGTAGCTGTAGCTGCTGGAGATGATTCACTGACTCAGAATCTAGTATCAACTGTTCAACAAGAACTTCTCCCTATAGTTAAGGAAGAGATTGATCAACAATCTCAAATTATGATGGCATCAATGAATAATGAAACTGTGGATCCTCAACAGATTCAACGACAGCAAAGTAATATGAATAGTTATGGTTCCTCTGGTCCTCCGAAATTTTACAAAAGCTCTGGAAGACCACCTTTGCCAAATCAAATGAAGACTGGTAGAGGAAGTTGTTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATTAACATCGAAACTGGTTTTGCTGTTATGAGAGGGATTGGAACGATTGGAGCTGCTAACAGCACTAGCAAAGAAGCAAATTTTTCTCCTTCTGCGGTGCGGTTAAAGAATGCTCCAAAATACTTATCGGTGTTAGGAGGTGAAATCGGGAATAGTAGCATTCCACAAAATAATCTAGAATCTGAAGGTTTTGCTGAAACCCGAGGTGACGATTTCATCCCGGGTTTCCCTTTAGGTTCTACATGGGAGGATACTGCAATGATATCTGATAATATTACCGGTCTGAAAAGATACAGAGATGATGACGATGTAAAACCGTTTTCTGCAGGTTTAAATGCAGCTGATACTAAGATTGAAACAGGAGGCCAGACTCCTGCTGCTCCTTTGGCTCATCAGACGAGTTTGCCTAATACCACAGCAGAATTGGCAGCCATTGAGAAGTTTTTGCAGTTCTCCGATTCTGTTCCGTGCAAAATCCGTGCCAAGCGCGGCTGCGCCACTCACCCGAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGCGAGCGAATGAGGAAACTACAAGATCTGGTGCCAAACATGGATAAGCAAACAAACACATCAGATATGTTGGACTTAGCTGTTGAGTACATTAAAGACCTACAAAAGCAAGTTGAGACTCTTTCAGAAAATCGAGCTAAGTGCACGTGTTCTCATCGCCAATAA 1491 0.4091 MLFYTIIFSLEPSYSVLRFLLFFITTTLTSTRDIEIFSFGAQRQTNRCLKKNKKKMESDLQQHPTMFLDHQNHHQQQQMNTGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGSGSGGGGGDAESASATATATPSVAVSVAVAAGDDSLTQNLVSTVQQELLPIVKEEIDQQSQIMMASMNNETVDPQQIQRQQSNMNSYGSSGPPKFYKSSGRPPLPNQMKTGRGSCSNLIRHGSSPAGLFSNINIETGFAVMRGIGTIGAANSTSKEANFSPSAVRLKNAPKYLSVLGGEIGNSSIPQNNLESEGFAETRGDDFIPGFPLGSTWEDTAMISDNITGLKRYRDDDDVKPFSAGLNAADTKIETGGQTPAAPLAHQTSLPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQKQVETLSENRAKCTCSHRQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00838 496 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 429 489 IPR036638 GO:0046983
Vifa6g00838 496 Coils Coil 466 493 - -
Vifa6g00838 496 MobiDBLite consensus disorder prediction 212 231 - -
Vifa6g00838 496 SMART finulus 432 482 IPR011598 GO:0046983
Vifa6g00838 496 FunFam Transcription factor bHLH130 family 427 495 - -
Vifa6g00838 496 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 426 476 IPR011598 GO:0046983
Vifa6g00838 496 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 158 490 - -
Vifa6g00838 496 Pfam Helix-loop-helix DNA-binding domain 431 477 IPR011598 GO:0046983
Vifa6g00838 496 Gene3D - 427 495 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00838 Vifa-Chr6 287683406 287685828 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00838 239 493 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 48.496 1.02e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa6g00838 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00838 - - gmx:100803833 520.39