Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00833 ATGGATTCAGCTCCACCATTGTTGGAGCTAGACCTTGACAACCTTAAAGCCCTCAAAATCCTAGGTAAAGGTGCCATGGGCACTGTCTTCCTCGTCCGCCACCCCACAACCACAACCACTACCACCACCGACACCAATACCACCACCAACACCAACCTCTTCGCTCTCAAAGTCGTCGACAAAACATCCATGCATGCCAAACTCGACGCAGAACGCCGCGCCCGTTGGGAAATTCAGGTCCTCTCAAAGCTCTCTCACCCTTTTCTCCCTTCCATTCTCGGCGTATACGAATCGCCACAATTTCTTGCATGGGCATTACCTTATTGTCCAGGTGGTGATCTCAATGTCCTCCGTTACCACCAAAACGACCGCGTTTTCTCTCCCACCGTTATTCGGTTCTACCTAGCTGAAATCATCTGCGCTCTCGACCACCTTCATTCCATGGGCATCGCTTACCGCGACTTAAAACCCGAAAATGTCCTTATTCAACGCTCCGGCCACGTCACCCTCACCGATTTCGACCTCTCTCGGAAACTCAAACACAAAACCGCTAACAACATTGTTTCTGCAAAGTCTTTACCTGATTCGAAGGTTTCAGAAGCTTCCAGAAAACACCGACGCAACTTTTCTCGCTGGATCCAGCTTCTTCCGATAGAATCCTCTCAATATTATTATCCCCGGATGAACGGTTTAGGTTTGAAGAAGACAATGTCAGCAAGAGTTATCCCGGTGAGTCGACGGAAACAAAGCTTCTCAAACGGAGAACGCTCCAACTCGTTCGTTGGAACCGAGGAATATGTCTCACCGGAGGTTGTTCAAGGTGATGGCCACGAGTTTGCTGTTGATTGGTGGGCGCTTGGGATTCTAACATACGAGATGCTATACGGCAGGACGCCGTTCAAGGGGAAGAATCGGAAGGAAACATTTAGGAATGTTCTGACAAAGCCGCCGGAGTTCATTGGGAAAAGGACGGAGTTGACGGATTTGATAGGGAGGTTGTTGGAGAAGGATCCTACGAAGAGATTGGGTTATTCGCGTGGTGCTATTGAGATCAAAGAGCATGGGTTCTTCAGAGGGGTTAATTGGGAAATGTTGACAAAGGTGGTGCGGCCGCCGTTTATTCCGGGAAGAGATGACATTAACGGAGAACTGCCGTCGGGGAAATTTTACGAGGGAAAAGGTGGTGTGGATATAAGGGATTATTTTCAGCGGTTGAAATCGCCGTCGCCAATGCCTCATGCTCCTGCGCCTTTGCCATTACAGTCGCCGCCTTGTTATAGGTTTAGGAAAAATGTTTCGCTAACAGCATTCTGA 1314 0.4909 MDSAPPLLELDLDNLKALKILGKGAMGTVFLVRHPTTTTTTTTDTNTTTNTNLFALKVVDKTSMHAKLDAERRARWEIQVLSKLSHPFLPSILGVYESPQFLAWALPYCPGGDLNVLRYHQNDRVFSPTVIRFYLAEIICALDHLHSMGIAYRDLKPENVLIQRSGHVTLTDFDLSRKLKHKTANNIVSAKSLPDSKVSEASRKHRRNFSRWIQLLPIESSQYYYPRMNGLGLKKTMSARVIPVSRRKQSFSNGERSNSFVGTEEYVSPEVVQGDGHEFAVDWWALGILTYEMLYGRTPFKGKNRKETFRNVLTKPPEFIGKRTELTDLIGRLLEKDPTKRLGYSRGAIEIKEHGFFRGVNWEMLTKVVRPPFIPGRDDINGELPSGKFYEGKGGVDIRDYFQRLKSPSPMPHAPAPLPLQSPPCYRFRKNVSLTAF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00833 437 Gene3D Phosphorylase Kinase; domain 1 15 112 - -
Vifa6g00833 437 SMART serkin_6 15 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00833 437 PANTHER FLIPPASE KINASE 1-RELATED 10 377 - -
Vifa6g00833 437 FunFam Serine/threonine-protein kinase OXI1 113 181 - -
Vifa6g00833 437 FunFam Serine/threonine-protein kinase OXI1 255 376 - -
Vifa6g00833 437 SUPERFAMILY Protein kinase-like (PK-like) 12 385 IPR011009 -
Vifa6g00833 437 Gene3D Transferase(Phosphotransferase) domain 1 251 376 - -
Vifa6g00833 437 Gene3D Transferase(Phosphotransferase) domain 1 113 184 - -
Vifa6g00833 437 Pfam Protein kinase domain 17 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00833 437 Pfam Protein kinase domain 251 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00833 437 ProSiteProfiles Protein kinase domain profile. 15 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00833 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00833 Vifa-Chr6 286647572 286648885 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00833 10 437 AGC Kinase Gene Family AT3G20830 57.968 3.93e-160 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vifa6g00833 Pkinase 7.4e-31 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g00965 1 161938268 161939422 Vifa6g00833 6 286647572 286648885 PCT