Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00831 ATGAACAACAATTGGCTTTCTTTCCCTCTCTCACCTTCTAATTCTTCCTTACCTTCAAATGATCTTCAAGCAACTCAATATCATCACTTTCCTCTTGGATTAGTCAATGAAAACATGGAAAACCCTTTTCAAAATCATGATTGGAATCTGATGAATAACCATAGCAACAACGAAGTACCAAAAGTTGCAGATTTTCTTGGTGTGTGCAAGTCTGAAAATAACTCAGATCTTGCTGCAACTAATGGAATTCAATCAAATGATTCAGATAACTATATGTTTACAAATAGCAATAGTCTCATGCCAATGCAAAACCAAATGGTAACAACTTGCACCAATGAGTATCAAGAAAAGGGTAATAACAGTAACTTGCAATCTTTGACATTATCCATGGGCAGTGGTAAGGATTCAACATGTGAAACTAGTGCCAGTGGTGACAACAATAGTACAAACACCGTTGAAGCAGCGGTTCCTAAAAGAACTTCAGAAACCTTTGGTCAAAGAACTTCAATATATCGCGGTGTAACTAAACACAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAACAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGTCAAGGTGGATATGATAAAGAAGAGAAAGCTGCTAGGTCTTATGATTTAGCTGCACTTAAGTATTGGGGGACATCCACCACTACTAACTTTCCTGTTAGTAACTATGAGAAGGAAATAGATGAAATGAAGCACATGACAAGACAAGAATTTGTAGCCTCTATTAGAAGGAAAAGCAGTGGTTTCTCAAGGGGTGCTTCAATGTACCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTAGCCGGAAACAAAGATCTTTACTTGGGAACTTTCAGCACAGAAGAAGAGGCTGCAGAAGCATACGACATAGCAGCAATAAAATTCAGAGGACTCAATGCTGTAACTAACTTCGACATGACTCGTTACGACGTGAAAGCCATTCTTGAAAGCAACACACTTCCTATTGGAGGAGGTGCTGCAAAAAGACTGAAAGAAGCACAAGCTCTAGAAACCTCTAGAAAACGTGAAGAGATGATGGCACTCACCTCATCATCTTTTCAATATGGAGCATCAAGCTCTACTAACACAAGGCTTCAACCTTACCCTCTCACTTATCATTATCCATTTGAACAACAACCTCAACCTCAACCTTTGTTAACCTTACAAAACAACCATGAAAACATGTCTCAATTCTCTCAACACCAAGGTGGTGGTTATTTCCAAACGCAGCTGGAGTTGCACCAACAACAAAACCAACCAACGTCTCAGAATAATAATATTGGTTCGTTCTACAATGGTTATTTTCAGAGTCATCATCCTGGTTTGTTTCAGATGAATAACATGGGGTCTTCTTCTTCATCTTCTGTGATGGGAAATAATGTTAGTGGTGGGTCTGGGATTTACAGTAATAGTGGAGGGTTGATGGGTAATAATAATGCTGCGGGAACTGTGGAGGAATTTGTTCCGGTTAAGGTTGATTATGATATGCCTGATGTAAGTGGTGGTTTTGGTGGCTGGTCGGCTGCGGGAGAGAACATGCAGGCATCAGCTACGGCTGATTTGTTTACTATGTGGAATGACTATGAAACAAGAGAGAATTAG 1668 0.4023 MNNNWLSFPLSPSNSSLPSNDLQATQYHHFPLGLVNENMENPFQNHDWNLMNNHSNNEVPKVADFLGVCKSENNSDLAATNGIQSNDSDNYMFTNSNSLMPMQNQMVTTCTNEYQEKGNNSNLQSLTLSMGSGKDSTCETSASGDNNSTNTVEAAVPKRTSETFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARSYDLAALKYWGTSTTTNFPVSNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGGAAKRLKEAQALETSRKREEMMALTSSSFQYGASSSTNTRLQPYPLTYHYPFEQQPQPQPLLTLQNNHENMSQFSQHQGGGYFQTQLELHQQQNQPTSQNNNIGSFYNGYFQSHHPGLFQMNNMGSSSSSSVMGNNVSGGSGIYSNSGGLMGNNNAAGTVEEFVPVKVDYDMPDVSGGFGGWSAAGENMQASATADLFTMWNDYETREN 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00831 555 FunFam AP2-like ethylene-responsive transcription factor ANT 169 235 - -
Vifa6g00831 555 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 59 433 - -
Vifa6g00831 555 FunFam AP2-like ethylene-responsive transcription factor 268 329 - -
Vifa6g00831 555 ProSiteProfiles AP2/ERF domain profile. 170 233 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 CDD AP2 169 235 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Vifa6g00831 555 PRINTS Ethylene responsive element binding protein signature 309 329 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 PRINTS Ethylene responsive element binding protein signature 171 182 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 Gene3D AP2/ERF domain 170 235 IPR036955 GO:0003700|GO:0006355
Vifa6g00831 555 Gene3D AP2/ERF domain 269 329 IPR036955 GO:0003700|GO:0006355
Vifa6g00831 555 SMART rav1_2 170 239 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 SMART rav1_2 269 333 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 CDD AP2 268 327 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 SUPERFAMILY DNA-binding domain 169 235 IPR016177 GO:0003677
Vifa6g00831 555 MobiDBLite consensus disorder prediction 130 158 - -
Vifa6g00831 555 Pfam AP2 domain 270 319 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 Pfam AP2 domain 170 225 IPR001471 GO:0003700|GO:0006355
Vifa6g00831 555 ProSiteProfiles AP2/ERF domain profile. 269 327 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00831 Vifa-Chr6 285987335 285989997 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00831 3 549 AP2-EREBP Transcription Factor Family AT1G51190 59.725 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa6g00831 AP2 4.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00831 K09285 - gmx:100170752 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00831 6 285987335 285989997 Vifa6g00831 6 285987335 285989997 ECH