Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00825 ATGAGTTTTTCTTTTCGCGGGAGTAGGGGAGATATTGAAAGCGGGTTTTCGCAATATGTTCCTGAAAGAACCTCAATGCGGATTCATCCATCTCGGTCAGCTCATAGCAATTCTCTAGCTTTTCTTATTGCGGTTATTTTGATATTCATGATATTAAGCTCCCCTCAGATGTCGCATTATTTTCTACTCTGGATAGTACTGGCTGTCTTCGTGATGGCTACAAGTCTGAGAATGTATGCAACATGTCAACAGCTTCAAGTGCAAGCCAGGGCTCATGCCGCAGCAGCCTCTGGGTTGCTTGGCCATGCTGAATTACATTTTCAAATGCCGCCATCTATTGCAATTGCAACTAGAGGAAGATTGCAGGGACTTAGACTTCAGCTCGCACTTCTTGACCGAGAATTCGACGAGCTAGATTATGATACTTTGAGAGCACTGGACTCTGATAATGCTTCTAGTACTCCTTCAATGACAGAGGAAGAGATAAGTGCCTTGCCTGTTCACAAATATAAGATTCCAGGCTCAACAAAAGATGGCTCCACCGGTTTAACATCCTCTTCAGAGGCAGCTGAGATTAAACAAGACTCCAAAGGAGCCGAGAGAAGTGCCAAAGGTTCAGAAGATGAGCTGATATGTACTCATCAGTTTCATGCCAGCTGCATCGATCCATGGCTTCGGCAACAAGGAACATGTCCTGTGTGCAAATTTAGGATGGGGTTAGGAAGGCAAGGAAACACCGATAGCGAGTCAGGTGATTCAGATATTCTGTAA 771 0.4462 MSFSFRGSRGDIESGFSQYVPERTSMRIHPSRSAHSNSLAFLIAVILIFMILSSPQMSHYFLLWIVLAVFVMATSLRMYATCQQLQVQARAHAAAASGLLGHAELHFQMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDNASSTPSMTEEEISALPVHKYKIPGSTKDGSTGLTSSSEAAEIKQDSKGAERSAKGSEDELICTHQFHASCIDPWLRQQGTCPVCKFRMGLGRQGNTDSESGDSDIL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00825 256 MobiDBLite consensus disorder prediction 169 202 - -
Vifa6g00825 256 SUPERFAMILY RING/U-box 210 239 - -
Vifa6g00825 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 243 IPR013083 -
Vifa6g00825 256 PANTHER TARGET OF ERK KINASE MPK-1 2 239 - -
Vifa6g00825 256 MobiDBLite consensus disorder prediction 177 192 - -
Vifa6g00825 256 Pfam RING-H2 zinc finger domain 211 235 IPR024766 GO:0008270
Vifa6g00825 256 ProSiteProfiles Zinc finger RING-type profile. 212 235 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00825 Vifa-Chr6 284088845 284092962 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00825 1 256 C3H Transcription Factor Family AT3G55530 61.232 1.02e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00825 K16283 - gmx:100805406 355.91