Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00824 ATGAATTCTGATACGCAACCCGAAACGGCGTCGTTCTGGTGTTACAGTTGCACGCGCTTCGTTAATCTCTCAGATCACAGTATCGTCGTTTGTCCACACTGCGAGAGCGGTTTCGTTGAAGAGATCCAAGCCGGCGAGTCGCCGCACCACCACCGACTTAGTCCGTTCACCGACGACGCGGTTTCTACCAGGAGACAAGGCTTTCGCCGCCGTAGACGCGACGCGGGAAGTCGGTCGCCGTTCAATCCTGTCATCGTGCTTCGCGGAGCCGGGGAAGACGGTGCTGATCAAGAAGGCGGTAGCGCGTTTGAACTGTTTTATGATGACGGTGATGGTTCTGGTCTTCGTCCTTTACCGCCGACGGTCTCGGAGTTTTTGCTTGGATCTGGATTTGATCGGTTGTTGGAGCAGTTTTCGCAGATCGAGATGAATGGATTTGGACGGCCGGAGAATCCGCCGGCTTCGAAGGCAGCTATTGAGTCTATGCCGACGGTTGAGATCTGTGAGGAACAGGTTGGTTGCGAATTGCACTGTGCGGTTTGTAAAGAAGAGTTTGAGTTAGGTGTGGAGGCGCGTGAATTACCTTGCAAGCATATTTATCATTCCGATTGCATTCTTCCATGGCTGTCGGTGCGGAACTCGTGCCCGGTGTGCCGTCACGAGCTTCCTTCTGATCTTAATAACCCTTTAGAATCTAGGGTTTCTGGACAAATTGATGAAGAAGCGATTGGGTTAACAATATGGAGGTTACCCGGAGGTGGATTTGCTGTCGGGAGATTCTCCGGTGGACGGAGTGCAGGGGAGAGTCATTTTCCGGTTGTGTACACGGAGATGGATGGTGGGCTCAATGCAAACGGAGCACCGAGGAGAATTTCTCGAACGGTGAGAAGTCATAGGGTTAGGGAAAGTCGGGGAATCGGAAGAGCTTTTCGTAATTTCTTCTCATTCTTTGGGAGAATCGGTTCTAGGTCAAATTCTGGTTCTGAGAATGTTTCTATGAGTAGAAGCCGTAGCTTAGTGAATTCATTGTTCAATAGAAATTCGCGCAGACCTAGGAGAACTTTGGACTTGGAAGATTGA 1080 0.5065 MNSDTQPETASFWCYSCTRFVNLSDHSIVVCPHCESGFVEEIQAGESPHHHRLSPFTDDAVSTRRQGFRRRRRDAGSRSPFNPVIVLRGAGEDGADQEGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEEQVGCELHCAVCKEEFELGVEARELPCKHIYHSDCILPWLSVRNSCPVCRHELPSDLNNPLESRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNANGAPRRISRTVRSHRVRESRGIGRAFRNFFSFFGRIGSRSNSGSENVSMSRSRSLVNSLFNRNSRRPRRTLDLED 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00824 359 MobiDBLite consensus disorder prediction 49 79 - -
Vifa6g00824 359 SUPERFAMILY RING/U-box 158 227 - -
Vifa6g00824 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 225 IPR013083 -
Vifa6g00824 359 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Vifa6g00824 359 SMART ring_2 178 218 IPR001841 -
Vifa6g00824 359 CDD RING-H2_RNF126-like 178 219 - -
Vifa6g00824 359 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Vifa6g00824 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 223 - -
Vifa6g00824 359 Pfam Protein of unknown function (DUF1117) 243 349 IPR010543 -
Vifa6g00824 359 FunFam E3 ubiquitin-protein ligase RING1-like 140 225 - -
Vifa6g00824 359 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00824 Vifa-Chr6 283540093 283541172 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00824 117 225 C3H Transcription Factor Family AT5G01980 48.624 9.36e-28 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00824 K11982 - gmx:100804867 501.13