Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00822 ATGGGGGAAGAGATACAAACACACGAAGAGCGTGTATCGGAGTGGGAAAAGGGTCTACCCACCATTCACGATCTCACTCCTCTCACCATGGCGTTGATCCCGCCGGAGCTAGCTTCCGCCTTCAGAATCTCCCCGGAGCCCCACCGCACACTCGTCGACGTCAACCGCGCCTCCCGCAACACTCTCTCTATCCTCCGCGGCGGCGGAACAAATCACCACGACGAGCCGCCTCTCGAAGAAGACGAAGAAATGGAAGAGGAAACCGATCGGGACGGTTCCGGTTCGGATTCGCGAAAGCACCGGAAGATCGATTCGGTTACAGAGGAAGCGGATTCGGCGGTTAGAACAGAGACGACGCTAAAACGGCCGCGTTTAGTGTGGACTCCGCAGCTTCACAAGAGATTCGTGGACGTGGTGGCGCATTTAGGGATTAAAAACGCGGTTCCCAAAACGATTATGCAGTTGATGAATGTTGAAGGGTTAACACGGGAGAATGTTGCTAGTCATTTACAGAAGTATCGCCTTTATTTGAAGAGGATGCAAGGTCTTTCGAACGACGCTCCTTCTTCTTCTGATCATCTTTTTGCTTCTACTCCTGTTCCTCAGAGTTTGCACGAATCTGCATCTGCTGTGAATTCTCATGCTCATTCTCATTCGCAATCTAATGGACATGGGAATTCGCAATCGCATCATTCTGTTACGATTTCTATGCCGTATCCGCCGCCTCCGTCCATGATGTCTATGCCTTTAATCGGTATGCCGCCACATCCGCATGGGCATATGGGAATGGCTTTGCATCCTCCTTCCGGTTCTTCTTCGTACCGGTCGCATCCGTTTAACATGATGCATCATAGGGATTGGCCTCCTCATCCTCACTCTCACTCTCACCCTCATATGTCTCCCAATGATAGTAATAAATAA 921 0.5081 MGEEIQTHEERVSEWEKGLPTIHDLTPLTMALIPPELASAFRISPEPHRTLVDVNRASRNTLSILRGGGTNHHDEPPLEEDEEMEEETDRDGSGSDSRKHRKIDSVTEEADSAVRTETTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNDAPSSSDHLFASTPVPQSLHESASAVNSHAHSHSQSNGHGNSQSHHSVTISMPYPPPPSMMSMPLIGMPPHPHGHMGMALHPPSGSSSYRSHPFNMMHHRDWPPHPHSHSHPHMSPNDSNK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00822 306 MobiDBLite consensus disorder prediction 184 241 - -
Vifa6g00822 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 5 277 IPR044841 GO:0003700|GO:0006355
Vifa6g00822 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 178 IPR017930 -
Vifa6g00822 306 FunFam Two-component response regulator 118 181 - -
Vifa6g00822 306 MobiDBLite consensus disorder prediction 91 115 - -
Vifa6g00822 306 Gene3D - 118 181 - -
Vifa6g00822 306 MobiDBLite consensus disorder prediction 62 115 - -
Vifa6g00822 306 MobiDBLite consensus disorder prediction 279 299 - -
Vifa6g00822 306 MobiDBLite consensus disorder prediction 184 235 - -
Vifa6g00822 306 MobiDBLite consensus disorder prediction 257 306 - -
Vifa6g00822 306 Pfam Myb-like DNA-binding domain 126 174 IPR001005 -
Vifa6g00822 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 123 175 IPR006447 GO:0003677
Vifa6g00822 306 SUPERFAMILY Homeodomain-like 119 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00822 Vifa-Chr6 282308277 282309197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00822 1 206 G2-like Transcription Factor Family AT3G46640 59.227 1.19e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa6g00822 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00822 - - tpra:123918598 410.994