Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00812 ATGGAGTCTGATCAATATGAACAAGGTGGTGGAGATGATCAAGGTGATGCAAAACAAGTGGTCAACCTTAGATCCTACGAGTGCAATTTCTGCAAGAGAGGTTTCTCTAATGCACAAGCACTAGGTGGACACATGAATATCCATAGAAAAGACAAAGCAAAACTCAAACAACAATCTTCAAATATGGAGGCAAATTCTAGTGATATTCAAGAGGCGAACAAGTTATTATTACCAAACTTGAATTCTAATATTGTTTTGTCTCAATCTCAACAACAAGATCAACACCATGCTCCAAGAGATGTTGATGAAACTCTTGTAACTCAAGTGAGACAACAACTTCCACTTTTTTCTGAATCACCAACAAAAAGTGAAATGCAAAAGCCACAATTATCACAAGGTGAAACTACTACTGCTGCTACTAGTACTACAGAAGAGGCTTTGTTATCGTCTGGTCAACATTCTCCAATGGAGTTAGACCTAGAACTGAGATTAGGGCCTGAGCCACATGATTCATCAGCACCAACTGGTACAAGAAAATTCTTTTGA 546 0.3828 MESDQYEQGGGDDQGDAKQVVNLRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNMEANSSDIQEANKLLLPNLNSNIVLSQSQQQDQHHAPRDVDETLVTQVRQQLPLFSESPTKSEMQKPQLSQGETTTAATSTTEEALLSSGQHSPMELDLELRLGPEPHDSSAPTGTRKFF 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00812 181 MobiDBLite consensus disorder prediction 114 181 - -
Vifa6g00812 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 26 53 IPR013087 -
Vifa6g00812 181 PANTHER OS07G0101800 PROTEIN 18 168 - -
Vifa6g00812 181 MobiDBLite consensus disorder prediction 114 150 - -
Vifa6g00812 181 SUPERFAMILY beta-beta-alpha zinc fingers 24 53 IPR036236 -
Vifa6g00812 181 Pfam C2H2-type zinc finger 26 50 - -
Vifa6g00812 181 Coils Coil 45 72 - -
Vifa6g00812 181 ProSitePatterns Zinc finger C2H2 type domain signature. 28 48 IPR013087 -
Vifa6g00812 181 Gene3D Classic Zinc Finger 16 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00812 Vifa-Chr6 281581642 281582187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00812 24 165 C2H2 Transcription Factor Family AT3G09290 39.735 8.27e-22 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa6g00812 zf-C2H2_6 1.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00812 - - tpra:123918605 207.994