Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00810 ATGAAGCAAGTGGAACAGGAAAAAGCCCATATCTTGGAAGCAAGACCGGTAGAGGAAATTGAGATACCGATTGTCTCTGATTCAGACAGACTTGATCTTCCGGCAACCATGTCGTCCTCTTGCAACAATTCTGTCTGTCGTTTTTCCCGAAAGGAAAACAGTGCTGGTGTATCAGATGAATCGGCGAAGAAACTTTCTTTACTGATAGTTTTCTATGCTGTTGTTATGGTTGTTGAACTTATTGGGGGAATGAAAGCTCACAGCTTATCTGTTATAAGTGATGCTGTACATTTGCTTTCTGATATTGCTGGTTTTGCTATCTCTCTCTTTGCGGTGTGGGCTTCGGGTTGGGAGGCAACGCCTCGTCAATCTTTTGGGTACAATCGTCTTGAGGTTTTGGGGGCTCTTTTATCTGTTCAGTTGATTTGGTTTATATCTGGTTTTTTAATATATGAAGCAGTTGGTAGAATTGTTTATAGAAATGATAGTGTCAATGGAAAGCTCATGTTTGCAATTGCAACATTTGGTTTTGTTCTTAACTGTATCATGGTTTTATGGCTTGGTCATGATCATAGTCATCATCATGGATTTGGACATTCACATGGTCATGATCATGATCATCATAATCATGCTCATGATCATGATCATAGTCATAATCATCATCAGTCCAGTAGAGTCGCGGATCATGTTCATGGGATGGAGGAACTGTCTAAAATATCTGATGAAATATCTGATGAAGAGGAACTGTCTAAAATATCTGATGAGGAGAACCTTACCATGATTTCAAATGGTAAGACGAAAAAGAATGTTTTGAACATTAATATTCAAGGGGCTTATTTGCATGTGATGACTGATATGATTCAATCTATTGGAGTGATGATTGCTGGAGGAGTAATATGGGCTAAACCAGAATGGTTTATAGTTGATCTTTTATGTACTCTCGTATTCTCGGTTTTATCCTTAAGTACTACTCTGACAATGCTTAAGAGCATTGTCGGTATTCTGATGGAGAGGACACCGAGTGAGATTAATATCATTGAGCTGGAAAATGCTCTTAGAAGTATCAAGGGAGTGCAGGAGGTTCATGATTTACACGTTTGGGCTATAACAGTTGGAAAACTTTTTCTATCTTGCCATTTAGTAGCTGAACCTGGGATCACTTCCATTGATTTACTTGATAGGATTAAACATTATTGTGAAAACACTTATCAAATACAACATGTAACCATACAAATTGAATAA 1242 0.3792 MKQVEQEKAHILEARPVEEIEIPIVSDSDRLDLPATMSSSCNNSVCRFSRKENSAGVSDESAKKLSLLIVFYAVVMVVELIGGMKAHSLSVISDAVHLLSDIAGFAISLFAVWASGWEATPRQSFGYNRLEVLGALLSVQLIWFISGFLIYEAVGRIVYRNDSVNGKLMFAIATFGFVLNCIMVLWLGHDHSHHHGFGHSHGHDHDHHNHAHDHDHSHNHHQSSRVADHVHGMEELSKISDEISDEEELSKISDEENLTMISNGKTKKNVLNINIQGAYLHVMTDMIQSIGVMIAGGVIWAKPEWFIVDLLCTLVFSVLSLSTTLTMLKSIVGILMERTPSEINIIELENALRSIKGVQEVHDLHVWAITVGKLFLSCHLVAEPGITSIDLLDRIKHYCENTYQIQHVTIQIE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00810 413 NCBIfam cation diffusion facilitator family transporter 63 413 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vifa6g00810 413 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 37 413 - -
Vifa6g00810 413 MobiDBLite consensus disorder prediction 197 227 - -
Vifa6g00810 413 SUPERFAMILY Cation efflux protein transmembrane domain-like 63 337 IPR027469 -
Vifa6g00810 413 Gene3D Cation efflux protein transmembrane domain 61 335 IPR027469 -
Vifa6g00810 413 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 341 413 IPR036837 -
Vifa6g00810 413 Pfam Cation efflux family 67 336 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00810 Vifa-Chr6 281025881 281027122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00810 26 413 Inorganic Solute Cotransporters AT2G46800 46.115 2.19e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00810 K14689 - gmx:100789520 491.115