Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00797 ATGGCTTCCATACCTCTCACCACCGCCACCACTTCAACCACCCTCCCATCCCTCCGCCTCCGTTCTTCTCCGCCACTTCGCCGACTCCAATTCAACAACACTTTCAAACCTCTCAAATCAGTTCATCACTCTTCCATTTCCTCCTTCTCACCCCTCCCACTCTCTAACCTCATCTCGAAACGCCACAGTCTCACTGTTAAGGCTTCATCAGCTTCCGTCACACCGGCTCCATCTCCAGCTCCGCCTCAGCCATGGCAAGGTGCCGCGATAAAACCTCTCTTAGCATCTATAGCAACCGGAGTTATACTCTGGTTCGTTCCCACTCCCGAAGGTGTATCCCGAAACGCGTGGCAATTACTCGCCATTTTCTTAGGAACTATCGTCGGGATCATCACACAGCCGTTACCTCTCGGTGCTGTTGCCATTTTGGGATTAGGAGTTTCGGTTCTCACCAAAACCCTACCCTTTGCTGCTGCATTCTCAGGTTTCGGTGATCCAATCCCATGGCTGATTTGTCTTGCATTCTTCTTCGCTAAGGGTTTTATCAAAACCGGACTAGCTTTATTGGCACCGGCGATTCCTTCGGTTTCGGCTAGGGCGGGTGGAATTTTTCTTCCATTGGTTAAGTCTCTCTGTGTTGCTTGTGGGAGTAACGTTGGTGATGGGACAGAGAACAAGCTTGGGTCGTGGTTGATGCTTACTTGTTTTCAGACTTCTTGTATTTCGTCGGCCATGTTTTTGACTGCAATGGCGGCGAATCCGCTGTGTGCCACTCTTACTTTGAATTCTATTAACCAGACAATTGGGTGGTTGGATTGGGCTAAAGCTGCTATTGTGCCTGGTTTGGTGTCGTTGATTTTGGTGCCGTTGATTTTGTATATTATATACCCTCCTACCATGAAATCTAGTCCGGATGCACCCAAGCTGGCTAGGGAAAGGTTGGCGAAAATGGGGCCAATGTCTGCCAATGAGAAAATCATGACTGCTACTCTATTTCTTACGGTGGGACTTTGGGTTTTTGGAGGGCTTCTTAATATAGATGCTGTAACTGCTGCCATTCTTGGATTAGCTGTACTCCTCATCACAGGGGTTGTAACATGGAAAGAGTGCTTAGCTGAGGGTGTTGCCTGGGATACTCTCACGTGGTTTGCTGCCCTCATTGCAATGGCCGGGTATTTGAACAAATATGGTCTTATCTCTTGGTTCAGTCAAACCGTAGTCAAGTTTGTTGGTGGATTGGGTCTTTCATGGCAACTTTCTTTTGGTATACTGGTTCTCCTATACTTCTACTCCCATTACTTCTTTGCCAGTGGAGCTGCTCATATTGGTGCCATGTTTACTGCATTTTTGTCTGTTGCTACTGCTCTGGGGACTCCACCATTCTTCGGAGCCATGGTGCTGTCTTTCCTCTCCAACCTTATGGGTGGCCTTACTCATTATGGGATTGGGTCAGCTCCAGTGTTTTTCGGTGCCAACTATGTCCCACTTGCCAAATGGTGGGGTTACGGCTTTGTTATTAGTATTGTTAACATTATAATCTGGCTTGGACTCGGTTCTATTTGGTGGAAAGCCATTGGCTTGTGGTAA 1587 0.4776 MASIPLTTATTSTTLPSLRLRSSPPLRRLQFNNTFKPLKSVHHSSISSFSPLPLSNLISKRHSLTVKASSASVTPAPSPAPPQPWQGAAIKPLLASIATGVILWFVPTPEGVSRNAWQLLAIFLGTIVGIITQPLPLGAVAILGLGVSVLTKTLPFAAAFSGFGDPIPWLICLAFFFAKGFIKTGLALLAPAIPSVSARAGGIFLPLVKSLCVACGSNVGDGTENKLGSWLMLTCFQTSCISSAMFLTAMAANPLCATLTLNSINQTIGWLDWAKAAIVPGLVSLILVPLILYIIYPPTMKSSPDAPKLARERLAKMGPMSANEKIMTATLFLTVGLWVFGGLLNIDAVTAAILGLAVLLITGVVTWKECLAEGVAWDTLTWFAALIAMAGYLNKYGLISWFSQTVVKFVGGLGLSWQLSFGILVLLYFYSHYFFASGAAHIGAMFTAFLSVATALGTPPFFGAMVLSFLSNLMGGLTHYGIGSAPVFFGANYVPLAKWWGYGFVISIVNIIIWLGLGSIWWKAIGLW 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00797 528 PIRSF DASS 79 187 IPR030676 -
Vifa6g00797 528 PIRSF DASS 187 528 IPR030676 -
Vifa6g00797 528 NCBIfam DASS family sodium-coupled anion symporter 187 522 IPR001898 GO:0016020|GO:0022857|GO:0055085
Vifa6g00797 528 PANTHER DICARBOXYLATE TRANSPORTER 2.1, CHLOROPLASTIC 187 528 IPR030676 -
Vifa6g00797 528 Pfam Sodium:sulfate symporter transmembrane region 188 528 IPR001898 GO:0016020|GO:0022857|GO:0055085
Vifa6g00797 528 Pfam Sodium:sulfate symporter transmembrane region 92 186 IPR001898 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00797 Vifa-Chr6 279199740 279202924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00797 1 527 Antiporters AT5G12860 74.778 0.0 782
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00797 - - gmx:100793559 817.379