Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00796 ATGAGGAAACCAGAAGCTGCATCTGGTAAAAACAACACTAACAATAAGCTTAGAAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAACTTATGAACTATATGTTGAAAAGTGGACAAGGTTGTTGGAGTGATGTTGCCAGAAATGCTGGATTGCAAAGGTGTGGAAAAAGTTGTAGGCTAAGATGGATTAATTACTTGAGACCTGATCTTAAACGTGGTGCATTTTCACAACAAGAAGAAGAACTTATCATCCATTTGCATTCTCTTCTTGGAAACAGATGGTCTCAAATAGCGGCGCGCTTACCGGGAAGAACAGATAATGAAATAAAGAATTTCTGGAACTCGACGATAAAGAAAAGACTCAAGAACATGTCGTCCAACACTTCGCCAAACCCGAGCGACGAATCCTCGTACGACCCTAGCAAAGATCATAGCAACATGGGAGGTTTTATAACATCTTCAACACAAGATCAACATATTGATAATAATAATAATAATCATTTTATGCCTATGTTCAATACTTCATCACCACCATCCATGCAAAACATGGTTTTCAATACCATTATCTCAGCTTCATCTGGTGGCGGATTCTTCAATAACAATAACAATAATAATACTACAGGTTCATACTTCTCACAGAATAATCATGACAGTAAAAGTACTTTTTATTTGGAAAAAGTGTTTGGGAGTGTAAATATCAATGGTGCAGAAAGAGATGATGAAATTGGAATTTACAATGTTCCTCCTCTAGAGAGTGTTAACAGTACTATCACTTATGATGAACATAGTATAAAAATGGAGAAGAAAATCGCATTCAATGGAGAAGATACTTACAACAATAGTAGCTATAACTTTGATGACATTAACAACATTGTTAATGTTAGCAAAAGAAGTGATCATCAAAATAGAGGTGATGATGAGGTGGAGAATTTATTTCATGGAGATTTATCTGTTGGAGATTGGGACTTGGAGGATTTGATGAAAGATGTTTCATCTTTTCCATTTCTTGATTTTTCAAACTGA 1023 0.3568 MRKPEAASGKNNTNNKLRKGLWSPEEDEKLMNYMLKSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNPSDESSYDPSKDHSNMGGFITSSTQDQHIDNNNNNHFMPMFNTSSPPSMQNMVFNTIISASSGGGFFNNNNNNNTTGSYFSQNNHDSKSTFYLEKVFGSVNINGAERDDEIGIYNVPPLESVNSTITYDEHSIKMEKKIAFNGEDTYNNSSYNFDDINNIVNVSKRSDHQNRGDDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00796 340 SMART sant 71 119 IPR001005 -
Vifa6g00796 340 SMART sant 18 68 IPR001005 -
Vifa6g00796 340 CDD SANT 22 66 IPR001005 -
Vifa6g00796 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Vifa6g00796 340 Gene3D - 73 146 - -
Vifa6g00796 340 MobiDBLite consensus disorder prediction 122 161 - -
Vifa6g00796 340 FunFam MYB transcription factor 16 72 - -
Vifa6g00796 340 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Vifa6g00796 340 CDD SANT 74 114 IPR001005 -
Vifa6g00796 340 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Vifa6g00796 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Vifa6g00796 340 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Vifa6g00796 340 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Vifa6g00796 340 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Vifa6g00796 340 FunFam Transcription factor MYB46 73 143 - -
Vifa6g00796 340 PANTHER MYB DOMAIN PROTEIN 55 12 283 - -
Vifa6g00796 340 Gene3D - 16 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00796 Vifa-Chr6 277911804 277914668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00796 3 338 MYB Transcription Factor Family AT3G08500 45.915 1.09e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa6g00796 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00796 K09422 - gmx:100786151 376.711