Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00774 ATGAGTTGGAACCCACACATGGAAGTTCATTACAATAACATCAGCTATCCTTATAATACAGCAGGAAGCTTTATTGAATATTTTGAAGGCCTCACCTACGAACATGTTAACTTCATTTTTTCCGGTGCATCGCATGCTCAGGAGAGTCCTTACCCTTCAAATTCAAACTTTTACAAATTTGGACTATCAGAGCCTGAGAATACTTCATACTATCGCTACAATCATGGATATGAGATAAATCATCATGAACCTCTAGTGGATGATTATAGGAGGCCTTCAGAAAACTCTTCAACGATCAGTGAGCATAGTCTGGCTGTCAGCACAGAATGGGGAGAAGATGGAAACACTGAAGCACAAGACAATTCTATTGAATGCCCTCGAAGACATCATAGTAGTTCCAATGATTCTCAGGTCATTTGGCAAGACAATATTGATCCCGACAACATGACCTATGAGGAATTACTTGAATTAGGTGAGGCTGTTGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATCTCCTTGCTTCCAGTTTCAAAGTTCAAGTGTGGGTTCTTCTTGAGGAAAAAGTCGCGGGATGAGAGATGTGTGATTTGCCAGATGGAATATAAAAGAGGCAACAAGAGGATCACTTTGCCATGTAACCATGTTTATCATGCTACTTGTGGGAACAAATGGCTTAGCATTAATAAGGCTTGCCCTATATGTTATACAGAAGTGTTTGCCGACAAATCAAAACAAAAATAA 747 0.4016 MSWNPHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESPYPSNSNFYKFGLSEPENTSYYRYNHGYEINHHEPLVDDYRRPSENSSTISEHSLAVSTEWGEDGNTEAQDNSIECPRRHHSSSNDSQVIWQDNIDPDNMTYEELLELGEAVGTQSRGLTQEQISLLPVSKFKCGFFLRKKSRDERCVICQMEYKRGNKRITLPCNHVYHATCGNKWLSINKACPICYTEVFADKSKQK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00774 248 Pfam Ring finger domain 195 236 IPR001841 -
Vifa6g00774 248 SMART ring_2 196 236 IPR001841 -
Vifa6g00774 248 MobiDBLite consensus disorder prediction 91 121 - -
Vifa6g00774 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 242 IPR013083 -
Vifa6g00774 248 MobiDBLite consensus disorder prediction 87 133 - -
Vifa6g00774 248 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
Vifa6g00774 248 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 242 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vifa6g00774 248 SUPERFAMILY RING/U-box 192 243 - -
Vifa6g00774 248 ProSiteProfiles Zinc finger RING-type profile. 196 236 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00774 Vifa-Chr6 272725743 272728854 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00774 5 245 C3H Transcription Factor Family AT3G63530 42.742 1.47e-63 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00774 K19045 - gmx:100793907 485.337