Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00773 ATGAAGTCTTGGTCTCCCGATGAAGAAATAGACGCGAACGGGTTCGATGATCTTAACAAACCGTTGTTACTGACTCAAGAAGATGATACACCTCGACGACATGGTGTACTTACGCCTCAAATAAATGATATCAAGAGTTTTGATTCTAAAATTAAGAGAAGCCTCAAGTCCATCATGGTTTCACCACTTGGCGCAAATTCCATTAATGCAAATGAGATAGAAGAAACTAGAATTGAAGTAAATGAGGTGACGGAGAAAGAAATATCAGAATGGCGAATCAAGATTAAGGGAATGACGTGCACGAGCTGTTCTCGATCTGTAGAGCATGCCTTGCAAATGGTTGATGGAGTGAAAAAGGCCATAGTTGGTCTAGCCTTAGGTGAAGCAAAAGTAGTCTTTGATCCTAAAGTCATAGATACCAACAAGATAATTGAAGCCGTAGAAGATGCTGGTTTTGGAGCAGAACTCGTTAGTTCGAGGAATGATATGAACAAAGTGCATCTAAAACTTGAAGGGATAGATTCAGTAGAAGATTTAAATGTTATAGTTTCTTCTCTTAATTTAGCTTCCGGTGTGAATCGTGTTGAAGTGGATTTAACGGAACATAAAGTTACAGTTAGCTATGATTCAGATATTACAGGTCCAAGATTTCTTATACAGTGTGTTCATGAAGCTAGTAGTGGTCACAGTGTGTATCAAGCAACTTTGCATACTAATTCCGGAAGTAGAGAAAGAGAGAAGTTGAATGAAATTCGTATGTACAGAAACCAATTTTTGTTAAGCTGCTTATTTTCTGTTCCCGTGTTTATGTTTTCCATGCTTCTTCCCATGCTTCCTCCGTATGGTGACTGGTTAAACTATAAGATTCATAATATGTTCACTCTTGGGTTGTTTTTGAGATGGATCCTTAGCACTCCTGTTCAGTTCATTATTGGCAAAAGGTTCTATTTAGGGTCATATCATTCACTAAGGAGATGGTCTGCAAACATGGATGTGCTGGTAGCACTTGGAACTAATGCTGCTTATTTCTACTCAGTATATGTTGTAGTTAAAACACTAACTTCGGCTACATTTCAAGGACAAGATTTCTTTGAGACCAGTTCTATGCTGATATCATTTATTCTATTAGGCAAATATTTGGAGATTATGGCGAAAGGGAAAACATCGGCCGCTTTAGAAAAGCTTATACAACTTGTTCCTGATAAAGCTTATTTGCTAGATTTTGATGCTAATGGAAATGTGGTTGGAGAGACAGAAATTGACACTGAACTTATACAAAAGAATGACATGATCAAGATTGTTCCCGGTGCTAAAATTCCAGCTGATGGTGTTGTTATAAAAGGGAAAAGTTGTGTGAATGAAAGTATGATCACAGGTGAATCAAGACCTGTTAATAAAATTCCAGGAGATAAGGTTATCAGTGGGACCATCAATGAGAGTGGTTGTTTACTGATCAAGGCAACTCATGTTGGATCTGAGACCACACTTTCTCAAATAGTTCAACTTGTAGAAGCTGCTCAACTTGCAAGAGCACCAGTTCAGAAACTTGCAGATGATATTTCAAGGGTTTTCGTTCCAATAGTTGTTGTTGCAGCCTTCATAACTTGGCTTGGATGGTTTATTCCTGGAGAAGCAGGTTTATACCCGAAAGATTGGATCCCGAAGGCTATAGATGCATTTGAATTTGCTTTGCAGTTTGCTATTTCTGTACTAGTTGTTGCTTGTCCATGTGCTCTTGGTCTAGCTACACCAACCGCAATCATGGTGGCTTCAGGTGTTGGTGCTTCTCAAGGTGTTCTCATAAAAGGTGGAGATGCAGTGGAAAAAGCACACAAGGTGAAAATTGTTGTGTTTGATAAGACTGGGACATTGACAATTGGGAAGCCAGTAGTGGTTAGAGCAATGCTGTTTTTTAAATTTTCTATGGAGGAGTTATGTGACATGACAATTGCTGTGGAGGCAAATAGTGAACATCCAATAGCAAAAGCTGTTGTGGCGTATACAAAGAGACTGCGCATGAGTTTTGGATCCTCTAGCAAAGATCAAGTAGAAGATGTGAATGACTTTGAAGTACACATGGGAAGTGGAGTAAGTGGAAAAGTTAAGGAAAAAACAGTTCTAGTTGGAAACAAGAGACTCATGCATGCTTTTAATGTACCAATGAGTCCCATGGTGGAGAGGTTCGTATCCGAGAATGAAACTTTTGCAAGAACATGTGTATTAGTTTCAATTGAAGGAAAAATTGCTGGAGCATTCTCAGTAACTGATCCTGTAAAGCCGGAGGCAAAGAGTGTCGTATCGTTTCTTCACTCCATGGACATCTCAACCATCATAGTCACAGGTGATAATTGGGCTACTGCAAATGCAATTGCAAATGAAGTTGGTATTAGAGAGGTTTTTGCTGAGATAGATCCTCTTGGAAAAGTCGATATAGTCAAAGACTTGCAGATGAAAGGAATGGTAGTAGCAATGGTAGGCGATGGAATAAACGACTCACCAGCTTTAGCAGCTGCTGATGTTGGTATGGCAATTGGTGCTGGAACAGACATAGCAATAGAAGCAGCTGATGTAGTTCTTGTCAAAAGCAACCTAGAAGATGTGATTACAGCAATAGATTTGTCAAGAAAAACCATATCTCGTATCTGGCTCAACTATATATGGGCTTTTGGTTACAACATTCTTGGTATGCCAATTGCGGCGGGTGTTTTGTACCCTTTTTTTGGAATCAGGTTGCCTCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCATCACTTAGTGTAGTTTCTTCATCACTCTTGTTGATGCTTTATAAAAAGCCTTTGAAGATGGATTATGGTTTGTCTAATGTTTAA 2853 0.3929 MKSWSPDEEIDANGFDDLNKPLLLTQEDDTPRRHGVLTPQINDIKSFDSKIKRSLKSIMVSPLGANSINANEIEETRIEVNEVTEKEISEWRIKIKGMTCTSCSRSVEHALQMVDGVKKAIVGLALGEAKVVFDPKVIDTNKIIEAVEDAGFGAELVSSRNDMNKVHLKLEGIDSVEDLNVIVSSLNLASGVNRVEVDLTEHKVTVSYDSDITGPRFLIQCVHEASSGHSVYQATLHTNSGSREREKLNEIRMYRNQFLLSCLFSVPVFMFSMLLPMLPPYGDWLNYKIHNMFTLGLFLRWILSTPVQFIIGKRFYLGSYHSLRRWSANMDVLVALGTNAAYFYSVYVVVKTLTSATFQGQDFFETSSMLISFILLGKYLEIMAKGKTSAALEKLIQLVPDKAYLLDFDANGNVVGETEIDTELIQKNDMIKIVPGAKIPADGVVIKGKSCVNESMITGESRPVNKIPGDKVISGTINESGCLLIKATHVGSETTLSQIVQLVEAAQLARAPVQKLADDISRVFVPIVVVAAFITWLGWFIPGEAGLYPKDWIPKAIDAFEFALQFAISVLVVACPCALGLATPTAIMVASGVGASQGVLIKGGDAVEKAHKVKIVVFDKTGTLTIGKPVVVRAMLFFKFSMEELCDMTIAVEANSEHPIAKAVVAYTKRLRMSFGSSSKDQVEDVNDFEVHMGSGVSGKVKEKTVLVGNKRLMHAFNVPMSPMVERFVSENETFARTCVLVSIEGKIAGAFSVTDPVKPEAKSVVSFLHSMDISTIIVTGDNWATANAIANEVGIREVFAEIDPLGKVDIVKDLQMKGMVVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADVVLVKSNLEDVITAIDLSRKTISRIWLNYIWAFGYNILGMPIAAGVLYPFFGIRLPPWLAGACMAASSLSVVSSSLLLMLYKKPLKMDYGLSNV 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00773 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 619 625 IPR018303 -
Vifa6g00773 950 NCBIfam heavy metal translocating P-type ATPase 330 934 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vifa6g00773 950 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 74 942 - -
Vifa6g00773 950 SUPERFAMILY HMA, heavy metal-associated domain 159 229 IPR036163 GO:0046872
Vifa6g00773 950 CDD P-type_ATPase_Cu-like 258 921 - -
Vifa6g00773 950 Gene3D - 89 161 - -
Vifa6g00773 950 FunFam Probable copper-transporting ATPase HMA5 748 882 - -
Vifa6g00773 950 SUPERFAMILY Calcium ATPase, transduction domain A 417 503 IPR008250 -
Vifa6g00773 950 Gene3D - 608 875 IPR023214 -
Vifa6g00773 950 PRINTS P-type cation-transporting ATPase superfamily signature 453 467 - -
Vifa6g00773 950 PRINTS P-type cation-transporting ATPase superfamily signature 617 631 - -
Vifa6g00773 950 PRINTS P-type cation-transporting ATPase superfamily signature 750 761 - -
Vifa6g00773 950 PRINTS P-type cation-transporting ATPase superfamily signature 772 782 - -
Vifa6g00773 950 PRINTS P-type cation-transporting ATPase superfamily signature 848 860 - -
Vifa6g00773 950 PRINTS P-type cation-transporting ATPase superfamily signature 825 844 - -
Vifa6g00773 950 SFLD C1.7: P-type atpase like 599 877 - -
Vifa6g00773 950 SUPERFAMILY HMA, heavy metal-associated domain 87 159 IPR036163 GO:0046872
Vifa6g00773 950 Pfam haloacid dehalogenase-like hydrolase 613 839 - -
Vifa6g00773 950 SFLD p-type atpase 599 877 IPR044492 -
Vifa6g00773 950 CDD HMA 93 155 IPR006121 GO:0046872
Vifa6g00773 950 PRINTS Copper-transporting ATPase 1 signature 116 139 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase 1 signature 258 279 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase 1 signature 145 165 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase 1 signature 313 338 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase 1 signature 188 209 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase 1 signature 293 313 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase 1 signature 90 115 - -
Vifa6g00773 950 Pfam E1-E2 ATPase 416 595 - -
Vifa6g00773 950 ProSiteProfiles Heavy-metal-associated domain profile. 164 230 IPR006121 GO:0046872
Vifa6g00773 950 SUPERFAMILY HAD-like 615 931 IPR036412 -
Vifa6g00773 950 FunFam Copper-transporting ATPase 1, putative 385 507 - -
Vifa6g00773 950 Pfam Heavy-metal-associated domain 93 152 IPR006121 GO:0046872
Vifa6g00773 950 ProSitePatterns Heavy-metal-associated domain. 95 124 IPR017969 GO:0046872
Vifa6g00773 950 NCBIfam HAD-IC family P-type ATPase 370 902 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa6g00773 950 FunFam Copper-transporting ATPase HMA5 88 159 - -
Vifa6g00773 950 ProSiteProfiles Heavy-metal-associated domain profile. 89 155 IPR006121 GO:0046872
Vifa6g00773 950 PRINTS Copper-transporting ATPase signature 802 819 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase signature 526 540 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase signature 367 386 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase signature 315 334 - -
Vifa6g00773 950 PRINTS Copper-transporting ATPase signature 898 912 - -
Vifa6g00773 950 Gene3D - 628 758 IPR023299 GO:0000166
Vifa6g00773 950 Gene3D - 385 507 - -
Vifa6g00773 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 366 610 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00773 Vifa-Chr6 272255827 272259659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00773 66 945 Primary Pumps ATPases AT1G63440 56.292 0.0 993
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00773 K17686 - gmx:100793894 1362.44