Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00769 ATGGATCATGAAAAGACCGAATGTCAAGCTCCCCCCGAAGGTCCTATATTGTGCGTTAACAACTGTGGATTTTTTGGAAGTGCAGCCACTATGAACATGTGTTCCAAGTGCCACAAAGATATGATGCTGAAACAGGAGCAGGCCCAGCTGGCTGCATCATCCCTTGGAAGTATTATGAATGGGTCTACAAGTAAAACTGAAAAAGAACCTGTTGTTGCTGCCAACATTGATATCCCAGCCGTTTCAGTGGAACCAAAAACTATCTCCAAGCCATTTTTATTTGGCTCAGCTTCAGAGGAGAATGGTGACGCAAAGCCAAAGGATGGTCCGAAGCGTTGCAGCAACTGCAATAAGCGAGTTGGTTTGACAGGGTTCAATTGTCGATGTGGTAACCTTTTCTGTGCTGTGCATCGCTACTCAGACAAGCATGATTGCCAGTTTGATTATCGTACTGCTGCGCGGGATGCCATAGCTAAAGCAAACCCAGTTGTCAAGGCTGAGAAGCTTGACAAGATTTAA 519 0.4547 MDHEKTECQAPPEGPILCVNNCGFFGSAATMNMCSKCHKDMMLKQEQAQLAASSLGSIMNGSTSKTEKEPVVAANIDIPAVSVEPKTISKPFLFGSASEENGDAKPKDGPKRCSNCNKRVGLTGFNCRCGNLFCAVHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00769 172 Gene3D - 1 68 - -
Vifa6g00769 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 54 - -
Vifa6g00769 172 SUPERFAMILY AN1-like Zinc finger 96 167 IPR035896 -
Vifa6g00769 172 Gene3D - 95 168 IPR035896 -
Vifa6g00769 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Vifa6g00769 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Vifa6g00769 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Vifa6g00769 172 FunFam Zinc finger AN1-type containing 6 89 168 - -
Vifa6g00769 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Vifa6g00769 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
Vifa6g00769 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Vifa6g00769 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00769 Vifa-Chr6 271271352 271271870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00769 4 172 C2H2 Transcription Factor Family AT3G52800 42.529 5.21e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00769 - - mtr:11414450 328.176