Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00761 ATGTATGATAATGACAATAGAAATGCTAATGAACTTCTGAAGCATATTAGGCAACATTCTTCACCCTTTGGTGATGCATCACAAAGGGTGGCACATTACTTTGCTAATGGCCTTGAGGCACGTCTTGTTGGCCATGGAGCCGGGGCACAAACATTCTATTCCTCGCCGAGCACCAAGAGGATCACTGCTGCTGAGTTTTTGAAAGCATACCAAGCTCATTTTATTAGGCCCTCCATTCATAAAATTTGCATACTCATTTGGTCTTGTGTTGAATTTGGATTAATACATGATTATAGACTAGTGTTAAAGATCTTTTGTGATGTATTATATACATTCTATAGCATCTGTTTTCCTCCGTTTTAA 363 0.3857 MYDNDNRNANELLKHIRQHSSPFGDASQRVAHYFANGLEARLVGHGAGAQTFYSSPSTKRITAAEFLKAYQAHFIRPSIHKICILIWSCVEFGLIHDYRLVLKIFCDVLYTFYSICFPPF 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00761 120 ProSiteProfiles GRAS family profile. 1 120 IPR005202 -
Vifa6g00761 120 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 73 IPR005202 -
Vifa6g00761 120 Pfam GRAS domain family 3 72 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00761 Vifa-Chr6 269936867 269937229 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00761 4 74 GRAS Transcription Factor Family AT1G07530 53.521 2.78e-20 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g00761 GRAS 1.7e-11 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00761 - - tpra:123918580 141.739