Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00760 ATGGATCCAAACTTTCCAGAAGCTAGCAATTTCACAAAGGGCTATTACCACTTTGATGAAGAAGGAAGCATAGTGGTCTCTGAGTTTGATCCTAATCAATATGATAACTTTCTTGATGCTGATCCAAATCAATATGATGGCTTCCTTGATGCTGATCCACTTGATTTTTCAGCCAACACCATTCCTACACAAGGTTCTTCTATTGCCTCTGTCACAGATCCTTCCCTTGAAGACACTGATTTTTCAGATACAATTAAGTTCATAAGCCAAATCCTTATGGAAGAGGATGTTGACCGCAGACCGTTTTACGACCCGCTTTTGCAAATTACCCAGAAATTATTCAATGATGCCCTCTTACAAGATAACAAACCTCTTTCCCCCAATCAACACCCTTTAGATATTCATAGCTCTGATGGAAGCACCAGCACCTGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAACAGTAACAGTAGTATTGAAGAATTTCGAGAGTCAAAACCCCTTTCCCCCGAAACTCCTGTTTCAGATCTTAGTAATAATGTTTTTCAGTTTAATTCACCTGCTATTTCTTACACTTTGTCTCGACCTCATACTACTAGTGTTAGTGATGGACTCAGAGATTTGGATTCTTCTATCACCAATCTGTTGGCGCAAAACATTTTCAGTGATGCAGATTCAGTTTCCTTATTCAGGAAAGGTTTAGAAGAAGCCAACAAGTTTCTTCCTCCGCAGCCTAAGCTCGTGACCGGTCTAGAATCCTCCAATTTCAATATGGTTGGAGAGAAAGAGAATCCCTTTCTGTTGAAGGGTAGAAAGAATCACGAGCGCGAAGAAAGTGATGATAAAGAAGAAGAAGAAGAAGAAGCTAGGAGAAGTAACAAGCAATCGGCCATTAGTGTTGTTGACGAAGATGAATTATCAGAGATGTTTGATAAAGTTTTGCTTAGTCTGGAGCATTTGCCACTTTGCAATGACAATGATAGCTTACAGAATGGACAAGTGAAAACTGAGCAGTCGCCTCCATCGAATGGAGGAAAGGCTCGTACTAAGAAACAAAGCAAGAAGAATGAGACCATAGATTTGAGGAATCTTCTGCTTCTGTGTTCACAATCTGTGTATTCCAATGACAACAGAAATGCTAATGAACTTCTGAAGCAGATTAGGCAACATTCTTCACCCTTTGGGGATGCACCACAGAGGCTGGCTCATTACTTTGCCAATGGCCTTGAAGCACGCCTAGTCGGTAATGGTGCTAAGGTACAAACGTTCTTTTTCTCGGCGAGCTCCAAGAGGATTAGCACTGCTGAGTTTTTGAAAGCATATCAAGTTCATCTATCTACTAGCCCATTCAAAAAGTTTGCATACTTTTTTGCAATTAAAGCGATTACCAAAGCTGCTGCAAATGCTGAAACCCTTCACATAATTGATTTTGGTATCCTTTATGGTTTTCAGTGGCCAATACTTATTAAGTTTTTATCCGATACAAAAGGTGGACCTCCAAAACTTAAGATCACCGGGATAGAGTTCCCTTTACCCGGCTTTCGTCCAATGGAAAGAATCGAGGAAACTGGTCGTCGTCTTGCGAACTATTGTAAGCGTTTCAATGTTCCCTTTGAGTTTAACGCCATAGCATCGCGGAATTGGGAAACAATTCAAGTCGAAGATCTTAAAATCAAGAGCAATGAGGTAGTTGTTGTGAACTCTTTGATGAGGTTTAAGAATTTAGTGGACGAGACAATTGAAGTGAACAGTCCTAGAGATGCGGTTCTTCATTTGATCAGGAAGATAAATCCGATACAGGATGATGATGGAGAAGGAAACTCTGGGACTAAGTTGAGGAAATGGTACCATAAAGATTTTGTTTTTGATGAAGACAACAATTGGATGCTTCAAGGTTGGAAAGGTCGCATTTTATATGCTTCAACTTGTTGGGTGCCTGCATAA 1977 0.3961 MDPNFPEASNFTKGYYHFDEEGSIVVSEFDPNQYDNFLDADPNQYDGFLDADPLDFSANTIPTQGSSIASVTDPSLEDTDFSDTIKFISQILMEEDVDRRPFYDPLLQITQKLFNDALLQDNKPLSPNQHPLDIHSSDGSTSTCNSNSNSNSNSNSNSNSNSNSNSNSSIEEFRESKPLSPETPVSDLSNNVFQFNSPAISYTLSRPHTTSVSDGLRDLDSSITNLLAQNIFSDADSVSLFRKGLEEANKFLPPQPKLVTGLESSNFNMVGEKENPFLLKGRKNHEREESDDKEEEEEEARRSNKQSAISVVDEDELSEMFDKVLLSLEHLPLCNDNDSLQNGQVKTEQSPPSNGGKARTKKQSKKNETIDLRNLLLLCSQSVYSNDNRNANELLKQIRQHSSPFGDAPQRLAHYFANGLEARLVGNGAKVQTFFFSASSKRISTAEFLKAYQVHLSTSPFKKFAYFFAIKAITKAAANAETLHIIDFGILYGFQWPILIKFLSDTKGGPPKLKITGIEFPLPGFRPMERIEETGRRLANYCKRFNVPFEFNAIASRNWETIQVEDLKIKSNEVVVVNSLMRFKNLVDETIEVNSPRDAVLHLIRKINPIQDDDGEGNSGTKLRKWYHKDFVFDEDNNWMLQGWKGRILYASTCWVPA 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00760 658 Coils Coil 283 306 - -
Vifa6g00760 658 ProSiteProfiles GRAS family profile. 363 658 IPR005202 -
Vifa6g00760 658 MobiDBLite consensus disorder prediction 276 290 - -
Vifa6g00760 658 MobiDBLite consensus disorder prediction 273 311 - -
Vifa6g00760 658 Pfam GRAS domain family 372 609 IPR005202 -
Vifa6g00760 658 MobiDBLite consensus disorder prediction 337 358 - -
Vifa6g00760 658 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 293 609 IPR005202 -
Vifa6g00760 658 MobiDBLite consensus disorder prediction 121 174 - -
Vifa6g00760 658 MobiDBLite consensus disorder prediction 121 185 - -
Vifa6g00760 658 MobiDBLite consensus disorder prediction 337 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00760 Vifa-Chr6 269934408 269936657 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00760 618 658 GRAS Transcription Factor Family AT1G07530 53.659 9.20e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa6g00760 GRAS 9.1e-66 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00760 - - lja:Lj0g3v0300259.1 632.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00760 6 269934408 269936657 Vifa6g00760 6 269934408 269936657 ECH
Vifa6g00760 6 269934408 269936657 Vifa1g01080 1 176996485 176997216 PCT