Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00756 ATGTTGGCCAAAATCCTCTACATTGCCTTCATCATCTACACAATGTCGGTTATTGAAGCCAAAATCCCCGGAATTTACTCTGGTGGTCAATGGCAAACTGCTCATGCAACTTTCTATGGCGGATCTGATGCTTCCGGCACCATGGGTGGAGCATGTGGTTATGGAAACTTGTACAGTCAAGGTTACGGAGTGAACACGGCGGCATTGAGTACTGCTTTGTTCAACAGTGGTCTGAGCTGTGGTGCTTGTTTTGAGATAAAGTGTGATAACGACAGAGAATGGTGCCATTCGGGAAGTCCTTCCATTCTGATAACTGCAACTAACTTTTGTCCTCCTAATTTTGCTCTTCCTAATGATAATGGCGGTTGGTGTAACCCTCCTCGTCCTCACTTTGATCTCGCCATGCCTATGTTTCTTAAGATTGCTGAGTATCGCGCTGGGATCGTCCCTGTTGCTTATCGCAGGGTGCCATGTAGAAAGCGCGGGGGAATAAGATTCACGGTGAATGGATTCCGTTACTTTAACCTGGTGCTGATTAGCAACGTGGCGGGTGCTGGTGATATCGTGCGCGCGTACGTGAAAGGAACCCGAACCGGGTGGATGCCACTGAGCCGAAACTGGGGTCAGAACTGGCAATCTAACGCGGTTTTGGTGGGCCAGGCATTGTCTTTCCGTGTCTCGAGCAGTGACCGTAGATCTTCAACTTCTTGGAATATTGCACCTCCTAATTGGCAATTTGGTCAAACTTTCACTGGAAAGAATTTTAGAGTCTAA 774 0.478 MLAKILYIAFIIYTMSVIEAKIPGIYSGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCDNDREWCHSGSPSILITATNFCPPNFALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGIRFTVNGFRYFNLVLISNVAGAGDIVRAYVKGTRTGWMPLSRNWGQNWQSNAVLVGQALSFRVSSSDRRSSTSWNIAPPNWQFGQTFTGKNFRV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00756 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Vifa6g00756 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Vifa6g00756 257 Gene3D - 18 159 IPR036908 -
Vifa6g00756 257 FunFam Expansin 20 159 - -
Vifa6g00756 257 PANTHER EXPANSIN-A15 17 255 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Vifa6g00756 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Vifa6g00756 257 CDD DPBB_EXPA_N 30 158 - -
Vifa6g00756 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Vifa6g00756 257 FunFam Expansin 163 255 - -
Vifa6g00756 257 SMART dpbb_1 66 153 IPR007112 -
Vifa6g00756 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Vifa6g00756 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Vifa6g00756 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Vifa6g00756 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Vifa6g00756 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Vifa6g00756 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Vifa6g00756 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Vifa6g00756 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Vifa6g00756 257 Gene3D - 163 255 IPR036749 -
Vifa6g00756 257 Pfam Lytic transglycolase 66 153 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00756 Vifa-Chr6 268735172 268736676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00756 5 257 Expansin Gene Family AT2G39700 83.399 2.15e-163 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00756 - - gmx:100809139 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01095 1 179008382 179009287 Vifa6g00756 6 268735172 268736676 PCT