Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00755 ATGAAGTGCTTCCATTTCTCCAACGGAGGATCAGAGAAACGAGGAGTCGCAGGAGTCGAAGACGAAGAAGCTTCAGCCTCAAGCTCAAGAGGTTCACGCGTCTCATGGGCGCGTTCCCTGAGCTTAATGGACTCACGTCGTTCCGAATACGACTCCGATTCAAGAGAGTTCTCCGACACGCTCGGCTTCCACGAGTTTCTATCTCAACGCCGAGCCAATCACCTTGTTCTCTTTTCCTTCTCTGACCTTAAAACCGCCACTCGTGGATTCAATAGAGCTCTCTTGATTGGCGAAGGTGGCTTCGGGTCTGTCTATAGAGGAACCCTAAATCATCACTCTCATCGTTCACAAATTGATGTCGCTGTTAAACAATTGAATCGTAATGGTCACCAGGGGCATAAGGAGTGGATTAATGAAGTGAATTTATTAGGTGTAATTAAGCATCCGAATTTGGTGAGGTTGGTAGGTTATTGTGCTGAAGATGATGAAAGAGGGATTCAGAGGCTTTTGGTTTATGAGTTTATGTCTAATAAGAGTTTGGAAGATCATCTTTTGGCTCGTGTTCCTTCCTCGGTTCTTTCTTGGATTACTAGATTGAAGATTGCTCAAGATGCTGCTCGGGGTTTGGCTTACCTACATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAAACATCCAACATCTTGCTGGATGAGGACTTCAATGCAAAGCTTTCAGATTTTGGACTCGCTCGGCAAGGACCCTCAGAAGGGTCTGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGATATGCTGCACCAGAGTATGTTCATACTGGCAAGCTGACTGCTAAGAGTGATGTTTGGAGCTTTGGCGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCTGTAGAAAGAAACTTACCAAGAAACGAACAAAAGCTTTTGGAGTGGGTAAGATCTTATGTATCTGATTCTAAGAAGTTCCATCATATTGTCGACCCTCGGCTTGAGGGACAGGATTGCACCAAATCAGCTCATAAACTTGCAATCCTAGCAAACAAGTGTCTAATGAAGCAGCCAAGGTCTCGCCCAAAAATGAGTGAGGTGGTTGAGATTCTCGACAACATTATCAATGAGACTGTTCCCGTGGATGAATGCATTTCCCAAACTGTTGCAGAAACTGGAGAAGGAAAAGAAGTAAATTTATCTGTAGAGGATGCCGAGCGGGAACCAGCTAAACAGGGGAGTAATTATCTGAAGAAGGTTTTTGAATTCAGAGACATGGTCAGCTTAAGAAATAAATCGGTTGGAAGGTTTGATTGGAAAAGTTGGGCACCTGGGCTTGTAAGAACTTGGTGA 1353 0.4405 MKCFHFSNGGSEKRGVAGVEDEEASASSSRGSRVSWARSLSLMDSRRSEYDSDSREFSDTLGFHEFLSQRRANHLVLFSFSDLKTATRGFNRALLIGEGGFGSVYRGTLNHHSHRSQIDVAVKQLNRNGHQGHKEWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYEFMSNKSLEDHLLARVPSSVLSWITRLKIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGSGYVSTAVVGTIGYAAPEYVHTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLEWVRSYVSDSKKFHHIVDPRLEGQDCTKSAHKLAILANKCLMKQPRSRPKMSEVVEILDNIINETVPVDECISQTVAETGEGKEVNLSVEDAEREPAKQGSNYLKKVFEFRDMVSLRNKSVGRFDWKSWAPGLVRTW 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00755 450 Gene3D Transferase(Phosphotransferase) domain 1 175 390 - -
Vifa6g00755 450 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 175 383 - -
Vifa6g00755 450 ProSitePatterns Protein kinases ATP-binding region signature. 96 123 IPR017441 GO:0005524
Vifa6g00755 450 MobiDBLite consensus disorder prediction 1 29 - -
Vifa6g00755 450 Pfam Protein tyrosine and serine/threonine kinase 96 371 IPR001245 GO:0004672|GO:0006468
Vifa6g00755 450 SUPERFAMILY Protein kinase-like (PK-like) 72 371 IPR011009 -
Vifa6g00755 450 CDD STKc_IRAK 96 374 - -
Vifa6g00755 450 PANTHER OS01G0588500 PROTEIN-RELATED 47 374 - -
Vifa6g00755 450 FunFam Serine/threonine-protein kinase BIK1 62 174 - -
Vifa6g00755 450 ProSiteProfiles Protein kinase domain profile. 90 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00755 450 Gene3D Phosphorylase Kinase; domain 1 58 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00755 Vifa-Chr6 268517063 268519325 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00755 78 371 Glycoside Hydrolase AT3G07070 51.525 6.21e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa6g00755 PK_Tyr_Ser-Thr 2.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00755 - - gmx:100811825 702.205