Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00754 ATGGGAATTAATATTGTTTCAGCCATGGGAGTTTGTTTGGGAAGCCAAGTGAAAGCTGAAGGCCAAACTAATTCTGTTTCAGGGTTAAGTTCAAAGAGTGTGAATGTTGTTGATACAGAAGATGTCACTCTCAGTAGCTCAACTAGTGAGATTGAGATACCGGCGGGATCGGTGCCTCGGGCTGACTCGTGTGAGGGGGAGATTTTGCAATCATCCAATTTGAAGAGTTTTGCTTTGACAGAACTTCAGGCTGCCACGAGAAATTTCCGTGTAGACAGTGTGTTAGGAGATGGAGGTTTTGGATCAGTTTTTAAGGGCTGGATTGATGAACACTCGGCTTCTGCTGCTAAGCCTGGCAAAGGCATTGTTGTTGCTGTCAAAAAACTTCATCAGGATGGCTTCAAAAGTCATGAGGAGATGTTGGCTGATGTCAATTATCTAGGCCAGCTTTCACATCCTCATCTAGTGAAACTGATTGGATACTGCCTTGAAGATGAAAACAATCTTCTGGTATACGAATTTATGCCTCGTGGCAGCTTGGAGAATCACTTGTTTCTCAGAGGCTCATATTTTCAACCTCTTTCTTGGAGTCTACGTTTGAAGGTTGCTCTTGGTGTTGCGAAAGGCCTGGCATTTCTTTACAGTGCTGAGAAAAAAGTGATGTACCGAAATTTCAAGACTTCAAATGTCTTGCTAGATTCGGATTATAATGCAAAGCTTTCTAATTTTGGGCTGGCAAAGGTCGGGTCTGCGGTTGATAAAGGTCGTGTCTCCACCGTATTAACTTATGGATATGCAGCTCCAGAATATGTAGCCACTGGTATTCACAGAGCTATAGGTGGTGTCTATAGTTTCGGAGTTGTCCTGTTGGAAATATTATCAGGGAGGAGAGTTATTGACAAGAATAGACCACACAGACAACAGAATTTGGTGGAATGGGCTAAGCCTTATCTGCCCAACAAGCGTAAGATTTTGCGCGTAATGGATAACCGTCTTGAAGGCCAATATGAACTAGACGATGCATATAAGGTTGCTACACTCTCCCTAAGATGCCTTGCAACAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTACAGGTTCAACATGTAAATGGATGCAATCAGAATCGTTTGCGTAGAAGAAGTGCTGATGATGTTACCCGTGTTATAGCAACCACGGCTTTTCCTCAACGCTCTACGTCTATGCTCTGTACATGA 1239 0.4318 MGINIVSAMGVCLGSQVKAEGQTNSVSGLSSKSVNVVDTEDVTLSSSTSEIEIPAGSVPRADSCEGEILQSSNLKSFALTELQAATRNFRVDSVLGDGGFGSVFKGWIDEHSASAAKPGKGIVVAVKKLHQDGFKSHEEMLADVNYLGQLSHPHLVKLIGYCLEDENNLLVYEFMPRGSLENHLFLRGSYFQPLSWSLRLKVALGVAKGLAFLYSAEKKVMYRNFKTSNVLLDSDYNAKLSNFGLAKVGSAVDKGRVSTVLTYGYAAPEYVATGIHRAIGGVYSFGVVLLEILSGRRVIDKNRPHRQQNLVEWAKPYLPNKRKILRVMDNRLEGQYELDDAYKVATLSLRCLATEAKLRPNMDEVVTNLEQLQVQHVNGCNQNRLRRRSADDVTRVIATTAFPQRSTSMLCT 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00754 412 FunFam Serine/threonine-protein kinase BIK1 57 174 - -
Vifa6g00754 412 ProSitePatterns Protein kinases ATP-binding region signature. 95 128 IPR017441 GO:0005524
Vifa6g00754 412 Pfam Protein tyrosine and serine/threonine kinase 91 369 IPR001245 GO:0004672|GO:0006468
Vifa6g00754 412 SUPERFAMILY Protein kinase-like (PK-like) 66 374 IPR011009 -
Vifa6g00754 412 PANTHER OS01G0588500 PROTEIN-RELATED 44 373 - -
Vifa6g00754 412 ProSiteProfiles Protein kinase domain profile. 89 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00754 412 Gene3D Transferase(Phosphotransferase) domain 1 175 395 - -
Vifa6g00754 412 Gene3D Phosphorylase Kinase; domain 1 65 174 - -
Vifa6g00754 412 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 175 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00754 Vifa-Chr6 268512773 268516197 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00754 67 369 Glycoside Hydrolase AT3G07070 44.118 2.35e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa6g00754 PK_Tyr_Ser-Thr 2.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00754 - - gmx:100788856 523.472