Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00753 ATGGGAATTAATATTGTTTCAGCCATGGGAGTTTGTTTGGGAAGCCAAGTGAAAGCTGAAGGCCAAACTAATTCTGGGTTAAGTTCAAAGAGTGTGAATGTTGTTGATACAGAAGATGTCACTCTCAGTAGCTCAACTAGTGAGATTGAGATACCGGCGGGATCGGTGCCTCGGGCTGACTCGTGTGAGGGGGAGATTTTGCAATCATCCAATTTGAAGAGTTTTGCTTTGACAGAACTTCAGGCTGCCACGAGAAATTTCCGTGTAGACAGTGTGTTAGGAGATGGAGGTTTTGGATCAGTTTTTAAGGGCTGGATTGATGAACACTCGGCTTCTGCTGCTAAGCCTGGCAAAGGCATTGTTGTTGCTGTCAAAAAACTTCATCAGGATGGCTTCAAAAGTCATGAGGAGATGTTGGCTGATGTCAATTATCTAGGCCAGCTTTCACATCCTCATCTAGTGAAACTGATTGGATACTGCCTTGAAGATGAAAACAATCTTCTGGTATACGAATTTATGCCTCGTGGCAGCTTGGAGAATCACTTGTTTCTCAGAGGCTCATATTTTCAACCTCTTTCTTGGAGTCTACGTTTGAAGGTTGCTCTTGGTGTTGCGAAAGGCCTGGCATTTCTTTACAGTGCTGAGAAAAAAGTGATGTACCGAAATTTCAAGACTTCAAATGTCTTGCTAGATTCGGATTATAATGCAAAGCTTTCTAATTTTGGGCTGGCAAAGGTCGGGTCTGCGGTTGATAAAGGTCGTGTCTCCACCGTATTAACTTATGGATATGCAGCTCCAGAATATGTAGCCACTGGTATTCACAGAGCTATAGGTGGTGTCTATAGTTTCGGAGTTGTCCTGTTGGAAATATTATCAGGGAGGAGAGTTATTGACAAGAATAGACCACACAGACAACAGAATTTGGTGGAATGGGCTAAGCCTTATCTGCCCAACAAGCGTAAGATTTTGCGCGTAATGGATAACCGTCTTGAAGGCCAATATGAACTAGACGATGCATATAAGGTTGCTACACTCTCCCTAAGATGCCTTGCAACAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTACAGGTTCAACATGTAAATGGATGCAATCAGAATCGTTTGCGTAGAAGAAGTGCTGATGATGTTACCCGTGTTATAGCAACCACGGCTTTTCCTCAACGCTCTACGTCTATGCTCTGTACATGA 1233 0.4323 MGINIVSAMGVCLGSQVKAEGQTNSGLSSKSVNVVDTEDVTLSSSTSEIEIPAGSVPRADSCEGEILQSSNLKSFALTELQAATRNFRVDSVLGDGGFGSVFKGWIDEHSASAAKPGKGIVVAVKKLHQDGFKSHEEMLADVNYLGQLSHPHLVKLIGYCLEDENNLLVYEFMPRGSLENHLFLRGSYFQPLSWSLRLKVALGVAKGLAFLYSAEKKVMYRNFKTSNVLLDSDYNAKLSNFGLAKVGSAVDKGRVSTVLTYGYAAPEYVATGIHRAIGGVYSFGVVLLEILSGRRVIDKNRPHRQQNLVEWAKPYLPNKRKILRVMDNRLEGQYELDDAYKVATLSLRCLATEAKLRPNMDEVVTNLEQLQVQHVNGCNQNRLRRRSADDVTRVIATTAFPQRSTSMLCT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00753 410 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 173 381 - -
Vifa6g00753 410 ProSiteProfiles Protein kinase domain profile. 87 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa6g00753 410 SUPERFAMILY Protein kinase-like (PK-like) 64 372 IPR011009 -
Vifa6g00753 410 Gene3D Phosphorylase Kinase; domain 1 63 172 - -
Vifa6g00753 410 ProSitePatterns Protein kinases ATP-binding region signature. 93 126 IPR017441 GO:0005524
Vifa6g00753 410 PANTHER OS01G0588500 PROTEIN-RELATED 42 371 - -
Vifa6g00753 410 FunFam Serine/threonine-protein kinase BIK1 55 172 - -
Vifa6g00753 410 Pfam Protein tyrosine and serine/threonine kinase 89 367 IPR001245 GO:0004672|GO:0006468
Vifa6g00753 410 Gene3D Transferase(Phosphotransferase) domain 1 173 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00753 Vifa-Chr6 268512773 268516197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00753 65 367 Glycoside Hydrolase AT3G07070 44.118 1.94e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa6g00753 PK_Tyr_Ser-Thr 2.6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00753 - - gmx:100798404 526.168