Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa6g00752 ATGGGTAACAAAATAGGAAAACTAACGGTGTGTTTCACGGGAAACAACGGTGGTCGGAAACACGATATATCAATTCTAATAACTGACCCGTTAGATGAAGGACTTGGTCACTCTTTCTGTTACGTTAGACCCGACCCGACCCGTTTATCAAGTTCGAAGGTTCATTCTGAAGAAACGACAACGTTTAGAACAATCTCCGGCGCTTCTGTTAGTGCTAACACGTCGACGCCGTTATCGACGGCGTTTATGGATTTGTACTCTTACGGTTGTTTCGATAGAGCTGCGGCGTTTGAGAGTTCAACTTCTTTTGCTTCTCTTCCGTTGCAACCGATTCCGAAGAGTCTGATGGGGACCGGTTCGGGTCCTTTTTCGAGTAATTTTGGAGGTGGTGGTGGTTTTCCGGGTTCCGGTCCGCTTGAGCGTGGGTTCATGTCCGGTCCGATTGAGCGTGGGTTTATGTCCGGTCCGATTGATCGGGGTTTATTTTCTGGGCCGATTGAGAAAGAAAATTCCGATCAGGGTTTTCCGAGAAGCTTCTCGCATAGTGGATTAGGGTTTTCGGTTAGACCTAGAACGAGGAAAGAGAAATGGATTCGTGTTCTTCAGAGAGCGATTTCGAAGACTCTGTCGCGTGGACAGAACTCTATTGTTACTCCGATCAAAGGTGTGACGGTGAAGGAACCGCCGGAGTGGATTCTTGCTGGGGAGAAGCATAATGAGAACTTGACGGTGAGTAGTTTGAATTTGAGTAGTGAAGGTAGTTTGGAAGATGATGATTCAATGGGGAGTCAGAATTTGCAATGGGCTCAGGGGAAAGCTGGGGAGGATCGTGTTCATGTTGTTGTTTCTGAGGAACATAGTTGGGTTTTTGTTGGGATTTACGATGGTTTCAATGGTCCTGATGCGCCTGATTATTTGCTTTCGAATCTTTATAGTTTTGTTCATAAGGAGCTTAAAGGGCTGCTTTGGGATGATGGGGTTTCATCGGATAATTCAAATTCGAAAGCACGTGATTCGATTGATGATGTTGATGTTGTTGAAGGAAAAGAAGGTAAGGTGTTTGATGATTGTTCTCAATGTGTTGATCAAGAGAAGGGGGATTTGGTTTCGAAAAGAAAAAAGAGAGGGAAGAATTCGAAGAATAAGTACAAGGATGCAGCGATGAAACACGAAGAAAATCATAGGAGGTGGAAATGTGAATGGGACAGGGAGAGACTAGAGCTTGATAGAAGATTGAAGGAGCAACTTAGTGGTGATGATGGTGGCAACGATTCTGTTAATCATTCAGATGTTTTGGAAGCTCTATCTCGGGCTTTGAGGAAAACCGAGGAGTCGTATCTTGATGTTGCTGATAAGATGGTGAGAGAGAATCCAGAACTTGCTCTGATGGGTTCGTGTGTTCTTGTAATGTTGATGAAAGGGGAAGATGTTTATGTGATGAATGTGGGAGATAGTAGAGCTGTGTTGGCGCAAAAGGCCGAACCTGATTATTGGATTGGGAAAATTCGACAGGATTTGGAGAGGATTAATGAAGAGACAATGCATGATCTTGAATCATGGGAGGATGCTGATAAATCAAATGCTATTCCTAGTTTAAGTGCTTTTCAGCTTACCAAAGATCATAGTACCAATGTTGAAGAGGAAGTAATCAGAATAAGAAAAGAGCACCCGGATGATCCTTGTGCCGTAGTCAATGATCGTGTTAAGGGATCTCTCAAGGTTACTCGAGCATTCGGTGCCGGATTTCTCAAACAGCCCAAATGGAACAACGCACTTCTAGAGATGTTTAGAATCGACTATGTAGGAAATTCTCCATACATCACTTGCCTACCATATCTTAAACACCACAGATTAGGCCAAAAAGACAAGTTCTTGATTCTATGCTCCGACGGGCTCTATCAATACTTATCAAACGAAGAAGCAGTAGCTGAAGTTGAAGTTTTCATCACATTACAACCTGAAGGCGACCCTGCTCAACATTTGGTTGAAGAAGTCTTGTTTCGTGCCGCAAAGAAAGCTGGTTTGGACTTTCACGAATTGCTCGAAATCCCACAAGGCGATAGGCGGCGTTACCACGACGATGTCTCCATCATTGTTATTTCTTTGGAAGGAAGGATATGGAGATCATGTGTATAA 2136 0.4373 MGNKIGKLTVCFTGNNGGRKHDISILITDPLDEGLGHSFCYVRPDPTRLSSSKVHSEETTTFRTISGASVSANTSTPLSTAFMDLYSYGCFDRAAAFESSTSFASLPLQPIPKSLMGTGSGPFSSNFGGGGGFPGSGPLERGFMSGPIERGFMSGPIDRGLFSGPIEKENSDQGFPRSFSHSGLGFSVRPRTRKEKWIRVLQRAISKTLSRGQNSIVTPIKGVTVKEPPEWILAGEKHNENLTVSSLNLSSEGSLEDDDSMGSQNLQWAQGKAGEDRVHVVVSEEHSWVFVGIYDGFNGPDAPDYLLSNLYSFVHKELKGLLWDDGVSSDNSNSKARDSIDDVDVVEGKEGKVFDDCSQCVDQEKGDLVSKRKKRGKNSKNKYKDAAMKHEENHRRWKCEWDRERLELDRRLKEQLSGDDGGNDSVNHSDVLEALSRALRKTEESYLDVADKMVRENPELALMGSCVLVMLMKGEDVYVMNVGDSRAVLAQKAEPDYWIGKIRQDLERINEETMHDLESWEDADKSNAIPSLSAFQLTKDHSTNVEEEVIRIRKEHPDDPCAVVNDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFRIDYVGNSPYITCLPYLKHHRLGQKDKFLILCSDGLYQYLSNEEAVAEVEVFITLQPEGDPAQHLVEEVLFRAAKKAGLDFHELLEIPQGDRRRYHDDVSIIVISLEGRIWRSCV 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa6g00752 711 PANTHER PROTEIN PHOSPHATASE 2C 257 700 IPR015655 GO:0004722|GO:0006470
Vifa6g00752 711 SUPERFAMILY PP2C-like 272 703 IPR036457 -
Vifa6g00752 711 Coils Coil 503 523 - -
Vifa6g00752 711 SMART PP2C_4 259 700 IPR001932 -
Vifa6g00752 711 Pfam Protein phosphatase 2C 422 652 IPR001932 -
Vifa6g00752 711 ProSiteProfiles PPM-type phosphatase domain profile. 258 702 IPR001932 -
Vifa6g00752 711 CDD PP2Cc 408 702 IPR001932 -
Vifa6g00752 711 MobiDBLite consensus disorder prediction 368 387 - -
Vifa6g00752 711 FunFam probable protein phosphatase 2C 4 233 707 - -
Vifa6g00752 711 Gene3D - 237 707 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa6g00752 Vifa-Chr6 267898183 267900770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa6g00752 1 711 PP2C-type Phosphatase Gene Family AT1G07630 68.508 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa6g00752 - - pvu:PHAVU_011G064200g 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g00752 6 267898183 267900770 Vifa6g00752 6 267898183 267900770 ECH